Paramisgurnus dabryanus (large-scale loach): 135741159
Help
Entry
135741159 CDS
T10799
Symbol
lsm3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03018
RNA degradation
pdab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135741159 (lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
135741159 (lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135741159 (lsm3)
03041 Spliceosome [BR:
pdab03041
]
135741159 (lsm3)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135741159 (lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
135741159 (lsm3)
Spliceosome [BR:
pdab03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
135741159 (lsm3)
Complex C
U2 snRNP components
135741159 (lsm3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
DUF8043
vATP-synt_E
RimP_C
YfkB
Peptidase_M16_M
Motif
Other DBs
NCBI-GeneID:
135741159
NCBI-ProteinID:
XP_065115882
LinkDB
All DBs
Position
24:complement(28513020..28516048)
Genome browser
AA seq
102 aa
AA seq
DB search
MADDVEQPPATNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgacgtggagcagcccccggccacaaacacagttgaagagcctctggatctg
atccgtctgagtttagatgagaggatttatgtgaagatgagaaatgacagagagctgcgc
ggcagactgcacgcctatgaccagcacttaaacatgatcctgggtgatgtggaggagacg
gtcaccactgtggaaatcgatgaagagacgtatgaggaaatttacaagtcaacgaagaga
aatatccccatgttgtttgttcgaggggatggagtcgtgttagtcgcccctccgctgaga
gtcggataa
DBGET
integrated database retrieval system
