| Entry |
|
|---|
| Symbol |
smchd1
|
|---|
| Name |
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
|
|---|
| KO |
| K23113 | structural maintenance of chromosomes flexible hinge domain-containing protein 1 |
|
|---|
| Organism |
pdab Paramisgurnus dabryanus (large-scale loach)
|
|---|
| Brite |
KEGG Orthology (KO) [BR:pdab00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:pdab03036]
135743907 (smchd1)
03400 DNA repair and recombination proteins [BR:pdab03400]
135743907 (smchd1)
Chromosome and associated proteins [BR:pdab03036]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
135743907 (smchd1)
DNA repair and recombination proteins [BR:pdab03400]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
135743907 (smchd1)
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
2:complement(54712348..54771639)
|
|---|
| AA seq |
1978 aa
MAEAGADNVSVNREKKHLKSVCVYDCRPGSSEAVARAIDVASLDYKAFLQAVKREFSLSV
NETFVISTTDRRPIDEELYMEIQDGRTLHLLESVDQELSVATQERIEYLPHYHTLVQCGM
YEYYASEGQKALPYAFAELIDNALSATAKNTGKRSIEIRLMFDEAQGGPAVVVMDNGCGM
TSKQLNNWAVYRLSKFIRNNSTFEDDHSGYVRPRAVPRSLNSDISYFGVGGKQAVFYIGQ
CVRMISKPTDSPYVHEFIMSKEDFERKEKNKEDIYSGFIRNRKPGDCTHLNVGEEQFLQS
IVLEEENKKSFTAVVITGIQPEHVTYLKQHFSLWTRVLAHTYHYYIHGIDGNDKKSLRRT
DDLNIDIQISLFERSTRMPRVMNLREVDNDMQTLYVNSSVSTFEFKATGAGDSLVEGIIR
FHPFLYDQETYPVDPYATSAPEDEDEECVVLNPEGRGKRPIFECFWNGRLIPYTTVSEFE
WCARPKKAGAVPLECYNRISGVLFANDRFQVSTNKLTFMDLELQLRDKDTIFTRVNNGQE
QRVRIQREFINWLKDCHERFDKQVMFQGFLGVTTRTDVTTKRMQSPWAQFKSIKWDGKTY
EKGQFVKSVRTQPVMFGSIVQFLLYGDYEGDVYSTGGHVQISLEPKELYGEKKIIPICKI
DRLATPAVIKKNIEDELAKLPDRLRLTWPEENPWVDKDVRPAGTPMGPIKVEILNKKGES
MSRLPLAVNAKKLSIRLRVIWHSSKGDVQTNSHIAVYSAKWEYWFKTMGNLSKLGKYTLN
LQTVISDSLADEWAGKRLPHHNLNFTIKEGEAVAFALGLISSPVQIGVPFSIPLEFKDEF
ENSARPPADIKPQLECSSPDLNFEGTAFGSIIKDVKARGNIGRLGKLHTVKVQIPGLKPN
VQSFQIAVQPGLPHTLVVFPEDDVISVENGTPVNIRVEVHDEYHNITTHPKLTVRCQLLG
APDLSVDVVDCSLSGSGLLLAKPLQLKTVHTQQNLTAKFSIPNHKTVACVERQLCVLPSS
RVTRLEVYTQDEGSDVMVLQDTERIDWTAGDTLGSLYFRLYDEGDRLVSLPPKLTSKIKV
NWTAEINPEELSKGKLPPLLVPTQAQREHYYSVSFHDQQTVNTSFIIMTRPDEPEDLRVN
LSDVIVQMGETLSRDIYVDVIDQFGNKTDSLSADSVKGLKVSADDLDKKSLLINWQASTA
QLLVRGVRFASGPPGPRELCFRYQNMKKFVRIKVTAGPPSNLILLNKPELPLQVLNGQGL
DTPFILQLCDEWGNPSPDQRINIMIKTLSPQLKIKSSVTSQPVDVEGKASFTLETISGPK
GEHRLEFQGSFSRKSIPGPVVKLNVIPDPNTPFTLDVEYNKSVTLCAGEIFPVFTVAVLS
EDGGPVKNICPASLSMLLWQGSASGSPPSSEASTLKCSKREDSETDGYFCFRDKQIPELA
GKYVIQFVLACEKSKYLWSQQISVNVVPNKPVKLAPEAPPLTPVVSNGNTRGNRTLLDSL
CLKIMDMYSNAAGEGLDGQVFVTVIGTGDAELPCFENGDRGVSYSLINGVAHITDLAVLE
DSPGVDGAEYHLHFNPKLKMSSVNITSYSLAFRFCNDAEHQKVMSTLSKKKDRLSQSVLM
YRDIFDTNEQLKSELKCQVEDAANKLRELKPIMIKNEFNISELTTIKAVENAINVKKNIL
TKIENQHRRKCTISDPFKGSPDVLGKIGHLAHVEDDDVAKVISWHILGDMDCVVTETTDA
AMKIYSDTNGRQQVIPLETVFWKPNNRPLPHIRNGSPLFPPPGNPVFVKDLLIFPQHAES
CNKVFTSLLGDTILVDDLDSANDYRRGVVQNKTQCPTILTRQGERIRSNGKFGGLQNKAP
SIEKLRGQVFGAPLPKEHNNTQAQIELLQQYLVAMQKSAKVQSEYSSHMQYLKSPEMVQK
QKELQLQEEELRGIEKTLASTPQRTPRPATVKRSLETETQEHSIPPKRSRRKTRKLDC |
|---|
| NT seq |
5937 nt +upstreamnt +downstreamnt
atggcggaggccggagcggataatgtttccgttaaccgggagaaaaagcatctgaaatcg
gtgtgtgtgtacgactgtcgccctggcagcagcgaggcggtggcgcgagcgatagacgtc
gcgagcctggactacaaggcatttcttcaggcggtgaagcgggagttttcactttcggta
aacgaaactttcgttatcagcacgactgaccggagaccgatcgatgaagagctttacatg
gagatacaggatgggaggacccttcacctgttggagtctgtggaccaggagctgtcagtg
gccactcaagagcgtattgagtatctgccccactatcacaccctggtgcaatgtggcatg
tatgagtactatgctagtgagggacagaaagcattgccctacgcttttgcagaactcatt
gataacgcgttgtcagccacagcaaaaaacactgggaaaaggtctattgaaatccgattg
atgtttgatgaagctcagggtggacctgctgttgtggtcatggataatggatgtggaatg
acatctaaacagctgaataactgggctgtttatcgtctgtccaagttcatacgaaacaac
agcacgtttgaagatgatcacagcggttacgttcggcccagagcggttccacgcagcctg
aacagtgacatatcctattttggagtgggtggcaaacaggcagtgttttacattggccag
tgtgtcaggatgataagtaaacccacagattctccatacgttcatgaatttatcatgtct
aaagaagactttgagcgcaaagagaagaacaaagaagacatttactcgggctttatcagg
aacagaaagcctggtgactgcactcatctgaatgtaggtgaggagcagtttctacagtcc
attgttcttgaagaagaaaacaagaagagttttacagccgtcgtcataactggaatccaa
cctgaacacgtcacgtacctcaaacagcactttagcctgtggacccgagtgttggcgcac
acctaccattactatatacatggaattgatggaaacgacaagaaaagtcttcggcgcact
gacgacttaaacattgacattcagatcagtctgtttgaacgctccacacggatgccacgt
gtgatgaatctgagagaggtggataatgacatgcaaactctctatgtgaactccagcgtt
tcaacgtttgagtttaaagccactggcgctggagactctttagttgagggaataatccgg
tttcacccgtttctctatgatcaagagacttatccagtggatccgtatgccacatcagct
ccagaggatgaagatgaagaatgtgtggtgttgaatcctgaaggtcgagggaagagaccg
atctttgagtgcttctggaatggccggcttattccctacactactgtctcagagtttgag
tggtgtgcaaggccgaagaaagcaggtgccgtgcctttggagtgttataaccgaatttca
ggagttctcttcgcaaacgatcgatttcaggtcagcaccaacaaactgaccttcatggac
ctcgaacttcaactgcgtgacaaagacaccatttttaccagagtgaacaacggtcaggag
cagcgagtgaggatccaaagagagtttatcaactggttaaaggattgtcatgagcgcttt
gataagcaagtgatgtttcaaggttttttgggtgtgacaacacgtacagatgtgaccacc
aagcgcatgcagtctccttgggctcaatttaaatctatcaagtgggacggcaagacttat
gagaaaggacaatttgtaaaatctgtcagaactcagcctgtcatgtttggatctatagtt
cagtttctgctgtatggagattacgagggagatgtttactctacaggtggacacgtccag
atttctctggaaccaaaggagttgtatggtgaaaagaagatcattccaatctgcaagatt
gaccgactggccacgcctgcagtcattaagaagaacattgaggatgaacttgccaaactt
ccggatcggttaaggctaacgtggcctgaggaaaacccatgggttgacaaagacgtgaga
ccagcaggcacacccatgggtcccattaaagtggagattttgaacaagaagggagagtcg
atgtctcggctgccgctggccgtcaatgccaagaaactttcgattcgcctcagagtcatc
tggcactcttctaaaggagacgtacagacaaactctcacatcgctgtatattcagccaag
tgggagtactggtttaaaactatggggaatttaagtaagctgggcaagtacacgcttaac
ctgcagacagtgatcagcgacagcttggccgatgaatgggctggaaagagattacctcac
cacaacctcaatttcactattaaagagggtgaagctgtagcttttgcattgggtttaatt
tcctctccggtccagattggagtgcccttcagtattcctctggagtttaaggatgagttt
gaaaattctgcccgtccacctgctgacattaaaccccagctggagtgcagttcaccagac
ttgaattttgaggggacggcttttgggagcatcatcaaagatgtgaaggccagaggaaac
ataggtcgactgggaaagttacatacagtgaaggttcagatcccagggctgaagccgaat
gtgcagtcgtttcaaatcgctgtgcagcctggccttccacacacacttgttgtctttcct
gaagatgatgtgatttctgtggagaacggcacaccggtaaacatcagagtggaagttcat
gacgagtatcacaacatcaccactcatcctaaactcacagtccgatgtcagctgctggga
gctcctgatctttctgtagatgtggtggactgcagtctctcaggatctggactcttgttg
gccaaacctcttcagctgaagaccgtacacactcaacaaaacctcactgccaaattcagc
attcctaaccataaaacagtggcgtgtgtggaacgacagctgtgtgtgttgcccagctca
cgtgtgacccgtctggaggtctacacacaggatgagggctctgatgtcatggtgctgcag
gatacagagcgcattgattggaccgctggagatacgcttggaagtttgtactttagactc
tatgatgaaggcgataggctggtttccctgccgccaaaacttaccagcaagattaaggtg
aactggacagcagagataaatcctgaagagctgtcgaaaggaaaactgccacctctgctt
gttcccactcaagcacagcgagaacattactacagcgtgtctttccatgaccagcagaca
gtcaacacgtccttcatcataatgactcgtccagacgaaccagaagatcttcgagtgaat
ctcagcgatgtgattgtccaaatgggtgaaactctgtcacgagacatttatgtggacgtc
atcgatcagtttgggaataaaacagacagtctgagcgctgatagcgtgaagggtttgaaa
gtgtctgcagatgatctggataaaaagtctcttctcataaattggcaggccagtacagca
cagttattggtacgtggtgtccggtttgcatcaggacctcctggaccaagagagttgtgc
tttaggtaccagaacatgaagaaatttgtgcggatcaaagtcactgctggacctccatcg
aatctcattctgctaaacaaaccagagttgcctctgcaggtgttaaatggtcagggtttg
gacacgcccttcattcttcagttgtgtgacgaatggggaaatccatctccagatcagagg
atcaacattatgataaagactctctccccacagctgaagatcaaatcatcagtgacgtct
cagcctgtagatgttgaaggaaaagccagtttcacattggaaactataagtggtccaaaa
ggggaacatcggttggaattccaaggatcatttagcaggaagagtattccagggcctgta
gtgaaactgaatgtgattcctgatcccaacacacctttcacgcttgatgttgaatacaac
aaaagtgtcacattatgtgctggagagatcttcccagtgtttacagtggccgtgttgtct
gaggatggcggtccggttaagaatatctgtccggccagtctgtcaatgttgttatggcag
ggctcggcatcaggatctcccccgtcttctgaagcctccactttaaagtgtagtaaacga
gaagactccgaaactgacggctacttctgcttcagggataaacagattccagagctagca
gggaaatatgttatccagtttgtattggcttgtgaaaaaagcaaatatctgtggagccag
cagatttcagtaaatgttgttcccaataaacctgtgaaattagcccctgaggctccgccc
ctaactcctgttgtgtccaatggtaatactcgaggcaatcgcacgctgcttgacagcctg
tgtctgaagatcatggacatgtacagtaacgcagccggtgagggtttggatggacaggtg
tttgttacggttataggcacaggagacgcagagcttccatgttttgagaatggagataga
ggtgtctcgtatagcctcatcaatggagtggctcatattactgatttggctgttttggag
gacagtccaggtgtggatggagctgaatatcatcttcactttaatcctaagctaaagatg
tccagcgttaacatcacttcatacagtctcgcgtttagattctgcaatgatgcagaacat
cagaaggtcatgtcaactttgagtaagaagaaagatcgtctttctcaatccgttttgatg
tacagagacatctttgacaccaacgagcaactcaagtcagaactcaaatgtcaggtggaa
gatgctgctaacaaactacgtgaactgaaaccaatcatgattaaaaatgagtttaacatc
tcagaattaaccacaattaaagcagtagagaatgcaataaatgtgaaaaaaaatattttg
accaagatagagaatcaacatcggcggaaatgcaccatttctgatccttttaaaggcagc
ccagatgttttgggaaagattggtcatctagcacatgttgaggatgatgatgtagcgaag
gtcatctcctggcatattttgggtgacatggactgtgtggtcactgaaactacagatgct
gccatgaagatttatagtgatacaaatggacgacagcaggtgattcctctggagacggtc
ttctggaaacctaacaacagaccgttgcctcacatcaggaatggttcacctcttttcccg
cctcctggcaatccagtgtttgtcaaagatcttctcatttttcctcagcatgcggaaagt
tgcaataaagtgttcacgagtcttcttggagacacaatcctggtggacgatttagattct
gctaatgattatcgcaggggggtggtccagaataagacgcaatgtccgacgatcttaacg
cgtcagggggagaggatacgcagcaatgggaaattcggaggtctgcagaacaaagcgccg
tctatagagaagctcagaggacaagtgtttggagcaccattaccaaaagagcacaacaac
acccaagctcagatagagttgttacagcagtacttggttgcgatgcagaagtctgctaaa
gttcagtctgaatatagcagtcatatgcagtatctgaagagtcctgagatggtacagaaa
caaaaagagcttcaactgcaggaggaggagttgagaggaatcgagaagacccttgcaagc
actcctcagcgcacgcctcgtcctgcgacagtcaagcggagtctagagacagaaacacaa
gagcactccatcccgcctaaaaggtctcgtcgaaaaacacgcaaacttgattgctga |
|---|
