Paramisgurnus dabryanus (large-scale loach): 135775412
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Entry
135775412 CDS
T10799
Symbol
tardbpa
Name
(RefSeq) TAR DNA binding protein, like isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135775412 (tardbpa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135775412 (tardbpa)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
135775412 (tardbpa)
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Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
RL
Motif
Other DBs
NCBI-GeneID:
135775412
NCBI-ProteinID:
XP_065141648
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Position
21:complement(11459771..11464922)
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AA seq
402 aa
AA seq
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MTECYIRVAEDESEEPMEIPSEEDGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEG
VLHAPEADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGVQKTSDLIVLGLPWKTTEQD
LKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFTDYETQAKVMTQRHMIDGRWCDCKLPN
SKYFLEQAGPDEPMRSRKVFVGRCTEDMSADELRQFFMQYGEVTDVFIPKPFRAFAFVTF
ADDQVAQSLCGEDLIIKGTSVHISNAEPKHNNSRQMMDRGRFGGFGGQGFSSNRSPNSNV
NFGALSLNPAMMAAAQAALQSSWGMMGMLAGQQNQTGASGSTPSGQNSGGRDQNPGYNAS
SNNYSTNSSASLGWGAGTNSASSGGFNSGFGSSMETKSSWGM
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagtgttacattcgcgtggcggaggatgaaagtgaggagcccatggagatcccg
tctgaggaagatggcactgtgctgttgtccaccgtcgccgcacagtttcccggtgcctgt
ggccttcggtaccggagcccggtgtctcagtgcatgagaggagtccgattggtggagggc
gttctgcacgcgcccgaagcggactggggaaacctggtgtacgtggtcaactatcctaaa
gataataagaggaagatggatgaaatggatgctgcatctgctgtgaagatcaagagaggc
gtgcagaagacatcagaccttatcgttctgggtttgccatggaaaacaactgagcaagat
cttaaagattacttcagtacttttggagaggttatcatggtgcaggtgaagagagatgca
aaaactggaaattctaaaggatttggctttgtaagatttacagactatgaaacacaagca
aaagtcatgacccagcggcatatgattgatggaagatggtgtgactgtaaacttcccaac
tcaaagtatttcctggaacaggctgggccagacgagcctatgagaagccggaaagtgttt
gtgggccgctgcacagaggacatgtctgccgatgagcttaggcagtttttcatgcaatac
ggcgaagtcaccgacgtcttcattcccaaacctttccgagctttcgccttcgtcaccttt
gccgacgatcaggttgcccagtccttgtgtggtgaggacctgatcattaaaggaaccagt
gtgcacatctccaacgctgagcctaagcacaataatagtaggcaaatgatggatcgtggg
aggtttggggggttcgggggacagggcttcagcagtaatcgcagtcccaacagcaatgtg
aattttggggcgcttagcctgaatccagccatgatggcagctgcccaggcagcccttcag
agtagctggggcatgatgggaatgcttgcaggtcaacagaatcagacgggcgcctctggc
tccacccctagcgggcagaacagcggtggtagagatcagaacccgggttacaacgcgagc
agcaataactacagcaccaacagctcagctagtttggggtggggggcgggtaccaattcg
gcctcgagcggtgggttcaactccggctttggatctagtatggagacaaagtcgagctgg
ggaatgtag
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