Paramisgurnus dabryanus (large-scale loach): 135786588
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Entry
135786588 CDS
T10799
Symbol
pcdh15a
Name
(RefSeq) protocadherin-15a isoform X1
KO
K16500
protocadherin-15
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pdab03037
]
135786588 (pcdh15a)
04515 Cell adhesion molecules [BR:
pdab04515
]
135786588 (pcdh15a)
Cilium and associated proteins [BR:
pdab03037
]
Primary cilia and associated proteins
USH complex and associated proteins
135786588 (pcdh15a)
Cell adhesion molecules [BR:
pdab04515
]
Cadherins
Protocadherins
135786588 (pcdh15a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Cadherin_2
SpuA_C
Motif
Other DBs
NCBI-GeneID:
135786588
NCBI-ProteinID:
XP_065152134
LinkDB
All DBs
Position
20:complement(3517858..3834499)
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AA seq
1404 aa
AA seq
DB search
MKRRWWRSGCLGSVIGIFVFFSQVSAQNTEECKLSRSGPPATIVTIDEESPNGTVLVENM
QINGRAQDPDRTISLTLLNNYDYWVILDSALQRLYLNSTGRVLDRDPPSYITTIVVQVQC
TNELVGTVILHEVRIVVRDKNDNTPQFQQPGYYVAVNELTPVGTTIFTGFSGSNGASDID
DGPNGQIEYGIQYNPNDPMSNRTVRIAGTLSGNIVLAERLNYEERTRYLIIVQANDRAPF
PGSRRTATTTLTLDVFDGDDLGPVFLPCILVNNTQDCPPVTYRVAIPELTNPSKLNPLNV
TPPIRAIDQDRNIQPPSDRPGILYFILVGQPTVYPEFFSLNKSTAELRLLKPVDRELYQR
FNLVIKAEQDNGHPLPSYANLNIEILDENNQAPYFQRPSYQGFISESASVGTTISAGANL
TAPLGIIALDNDIEETKDPQLQISLNDYTSIFTITTTGITRYLTLLKPVDREKQTNYTFT
LLASDGVQLSRPVTVDILVIDANDNSPTFTQVSYSVEVFTNMLPGETVLQLFAQDADAGL
NGLITYSILAGDQGDFIINNRTGRITLAPGVTLVVGRSYALTVRASDNAPDPERRSSITT
VYIEVLPPNNQSPPRFPLQTYNLEISEAMRIGAILMNLQATDRELDPITYQIDSGDPQQV
FNLSRTIGLLLLAKPLDRETTDQYRLIVTASDGHPGGISTATVSIVVTDVNDNDPTFDLT
LPRNLTVQEEQANVFVGQVRATDPDAGQNGQVRYRLLSFASLFTINATGTIVTAVPLDRE
TRSRYDLIVEASDGAVDPRRTTITLLVEVTDINDNSPVFSQATYTVSVPENTPAGTVILR
LSAVDADLVSNVTYRIKTEAARQLFAVNRLTGAVSVLQALDFEDLTAGNSTYTFEVEALD
HGGVLPPGTATVIVRITDMNDFTPVFSQLLYKGMVAPNAEKGTVITTVFAEDQDPPGSPA
SKVHYRVDQDLSPYSGSIFDVQQDTGRVVTKVNLNEQPTAVFRLVVIAYDDGEPVKMNRT
TVEITVLQPSRIPIFTEEEYRFSPVSESAPVGTPVGLILAAAVNTTVFYSIVDGNQGGEF
MVNNRTGIIYTNKSLDYETVTSYVLRVQADSLALILANLRVPSKTNTAKVYIEVQDENDH
PPVFSRSLYIGGVTEDTKTFTTVLKIVATDVDTGNYSKMAYRLIIPPAAEGQDSFIIETY
TGIIKSAIMFRNMRRSYFKFEVIATDNYGLGLSSRADVVVSVVNALDMQVVVSNVPPTVV
EENKDQLIAILERYVQDQIPGAKVIVESIGPRRHGEGYELEDYTKSDLQVYAIDPLTNRA
ISRQELFKFLDGKILDINKEFQPYLGEGGRILEIRSPDIVATVKKAAQAVGYTEGALLAL
AIIIILCCIPAILIVMVTYKQFKE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcgctggtggcgatctggctgtctgggctctgtgattggaatctttgttttc
ttctctcaagtctcggcccaaaacactgaagaatgcaagttgtctcggtcaggtccgcct
gctactatcgtcaccattgatgaggagagtccaaatggcaccgttctcgtggaaaacatg
cagatcaacggtcgagcacaggatccagatcgaaccatctccttgacactgctgaataac
tatgattactgggttatccttgactcggcattgcagagactgtatctcaacagcaccgga
cgagtactcgaccgagacccaccaagttacatcaccaccattgtcgttcaggttcagtgc
accaatgaacttgtggggacagttattctgcatgaggtacggatagtggtgagggataaa
aatgacaacacgcctcaattccagcagcccggttactacgtagcggtaaatgagctcact
ccagtcggtaccaccatcttcaccggcttctcaggaagcaacggagcctcagacattgac
gacggaccgaatggacagattgaatatggcattcagtacaacccaaatgacccgatgtcg
aacaggaccgtgcggattgctggaactctgtctggtaacattgtgttggcagagagacta
aattatgaggagagaactcgatatctaattatagtccaggccaatgaccgggctccgttt
ccaggaagtcgtcgcacggcaaccaccacactaaccctggatgtttttgatggagacgat
ttgggtcccgtatttctcccgtgcattctggttaacaacactcaggactgtccccccgtc
acgtaccgcgtggccattcctgagctcacaaacccgagcaagctgaaccctttaaatgtg
actcctcccattcgtgccatagaccaggatagaaacatccagccaccctcggacagaccc
ggaattctgtacttcatcctggttggtcaaccaaccgtttacccagaattcttttccctc
aacaagagcacagccgagctacgtctgctgaaaccagtggacagagagctttatcaacgc
ttcaatctcgtcattaaggctgaacaggacaacggtcaccctctcccttcatatgccaac
ttaaacatcgaaatcctggatgagaacaaccaggcaccatatttccagcgaccctcgtac
cagggcttcatcagcgagtcggcctccgttggcaccaccatctctgcgggcgctaacctc
acagccccgctgggcatcatagcactggacaatgacatcgaggagaccaaggatccccaa
ctgcagatttcgctgaatgattacacctccatcttcaccatcacaactacgggcatcaca
cgatatctcaccctactgaaaccagtggacagagagaaacaaaccaactacaccttcacg
ctgttggcatctgacggcgttcagctgagcagacccgtgacggtggacatcctggtgatc
gatgcgaacgataactcacccacttttactcaggtgtcctacagtgtggaggtcttcacg
aatatgttgcccggagagaccgtcttgcagctgtttgctcaggacgctgacgctggttta
aacggactgatcacgtactcgatcctggctggagatcagggtgatttcatcatcaataac
cgcacaggtcgaatcacattagcaccgggggtcacgctggtcgtcggccgctcgtacgct
ttgaccgtcagagcttcagacaatgcacctgacccagagagaaggagctccataactaca
gtctacattgaggttttgccacccaacaatcagagtcctccacgattccccctgcagaca
tacaacctagagatcagtgaagccatgaggatcggagccatactgatgaacctgcaggct
acagaccgtgagttggatccaatcacctaccagatagacagcggtgacccgcagcaggtc
tttaatctctcacgaactataggtcttctgctgctggccaaacctctggacagagaaacc
actgaccagtatcgtcttatcgtcaccgcttctgacgggcatccaggagggatatccact
gccaccgtaagcattgttgtgacggacgtaaatgacaatgacccaacctttgaccttacc
ctacccagaaatctgacagtgcaggaggaacaagccaatgtgtttgtgggtcaggtcagg
gccactgatcctgacgcgggacagaacgggcaggtccgctaccggctgctctcctttgcc
tctctcttcaccataaacgccacaggcaccatcgtcacggccgtaccgttggacagggag
acgcggagccggtatgacctgatcgtggaggcatccgatggtgcggtagacccgcgtagg
accaccatcacactactggtggaggtgacggacatcaacgacaacagccctgtattttca
caggccacgtacacagtcagcgtccccgagaacacgcctgctggaaccgtcatactgaga
ctcagtgcggtggatgcagatctcgtctctaatgtgacctacagaatcaaaacagaagcg
gcccggcagctctttgctgtgaaccggctgaccggcgccgtctctgtgcttcaggctttg
gactttgaggacctaacagcagggaacagcacgtacacctttgaagtggaggcgctggat
cacggcggagtcttgccacccggcacagcaacagtcatcgttaggatcacggatatgaat
gatttcacgccagtcttcagtcagctgctttacaaagggatggttgctccaaatgcagag
aaggggactgttatcaccactgtgtttgcagaagatcaggaccctccaggttcacccgcc
agtaaagtgcactacagagtggatcaagatctgtctccctacagcggcagtatctttgat
gttcagcaggacacaggcagagtcgtcaccaaagtcaatctgaacgagcagcccacagcc
gtcttcagactggtggtgattgcctatgatgatggagaaccggtgaagatgaacagaact
acggtggaaatcacggttctccagccctccaggatccccatcttcaccgaagaggaatac
aggttcagcccggtgagcgagagcgcacctgtcggaacgccggtgggacttattttggcg
gcagctgtcaacaccacagtcttttactctatagtggatggaaatcagggaggagagttc
atggttaataaccgcaccgggatcatctacacaaataaatcactggactatgaaacggtg
accagttacgtgctgcgggtgcaggccgactccctcgccctcatcctggctaaccttcgc
gttccctccaaaacaaacacagcgaaggtttacatcgaggttcaggatgagaatgatcat
ccgccggtcttctcaaggtccctgtacatcggtggcgtgacagaagacacaaagactttc
actacagtccttaaaattgtggctacagatgttgacaccggaaactacagtaaaatggct
tatagactgatcatcccacctgcggctgagggccaggacagtttcatcattgagacctac
acgggcatcataaagagcgccatcatgttcagaaacatgcgccggtcttacttcaagttt
gaggtcattgccacagacaactacgggcttggtctgagcagcagagcggatgtggtggtg
tcggtcgtgaacgcgttggacatgcaggttgtggtctcaaatgtgccgcccaccgttgtg
gaggagaataaagatcagctgattgctattttggaacgctatgtgcaagatcagatcccc
ggtgctaaagtgatagtggagtcgattggcccccgtcgacatggagagggatatgaactg
gaggactacactaaatcagatctgcaggtgtacgccatcgaccctctaaccaacagagcc
atctccagacaagagctcttcaagtttctggatggcaagattctggacatcaataaagag
tttcagccatacctgggcgagggcggacggattttggaaatccgttctcctgacattgtt
gcgactgtgaagaaagctgcgcaggcggtgggctacacagagggggcgctgttggcgctg
gctatcatcatcatcttgtgctgcattcctgccattctaatagtcatggtgacgtataaa
caattcaaagagtaa
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