Pocillopora damicornis (lace coral): 113669395
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Entry
113669395 CDS
T05773
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pdam
Pocillopora damicornis (lace coral)
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pdam03036
]
113669395
03400 DNA repair and recombination proteins [BR:
pdam03400
]
113669395
Chromosome and associated proteins [BR:
pdam03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
113669395
DNA repair and recombination proteins [BR:
pdam03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
113669395
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Motif
Other DBs
NCBI-GeneID:
113669395
NCBI-ProteinID:
XP_027041215
LinkDB
All DBs
Position
Unknown
AA seq
2032 aa
AA seq
DB search
MKSSNKDDTSSSEQSDEDAAVFIYDRRAGSRPEEKIQLGGIFNFNTFKEKTRVAFNIPEN
ETFVIVTTNRQEILDDRTYEELVDGNETLYILTSSNQELSAPTEEKVEYIPHYDTLVKSG
MYEYYASEGQNPLPFAFAELVDNAMAATAENDGSREIEIRLMFDDSVGKAVVCVLDNGAG
MTSKELNNWAIYRLSKFNRQTGKKVVGDVPRSLNSDISYFGVGGKQAIFFIGDATRMITK
SRDCSDIHELCISQAEFERREKKKQSIYGGAILNRRAGDHQHIPEDEESVKKLVEEEVQK
ESFTAVVITGIAPEHILYLKTHFKQWCRQLAHIYHYYIHGPRGNEKPVGRGTTASPFRNI
DIHVSLIERGKQAKRMQLRDIDDDMQTQYIRTAASVFEFRARAESGGVVEGVLRYHPFLY
DRETYPTLEGEIPVVDNAEELADPLEKDSRAPRGSRPIFECYWNGRLIPYTNIDVLEWCQ
PPKKWTIPLECYHRFSGCLWTNDAFQVSTNKLTFMDLEVKIKDKNTIFSRVILGQEQRVN
ISRAFYDWVRECHENHDKQVKFLGFQGQIKRPDLPQKRNQSPWCVFNSIEWDGKIFKVGQ
LIRTQRTLPLICGTVKRFLLFGDHDGDVFATGGEMEIVQEPVSLYGDTKFFSLAKLDRML
NPALIKKFIDEEEAKLPSKLVLEWPENDKLEPNSKIPAGTTIGAIRVDIHNGRGESVNKV
PGDRRRLLVELKVIWHGNDKDGDKVITNHVCQHGGKNWPYWFRKMENITHLGPHTLQLQV
LLGDTSAGSSIKSLPCHRIKFTVTEAHPNKFTVGMLETPLRVGVPFQIPLNLLDEFNNPS
KLTEELSPILNASGLELAHQGTSVKGNSLIVKGVIALGSVPSHAGKDFNLKITLPGLEEG
SQSLKIRLLPGPPESLVVTPDSDDITVENNSSLQLQVQVQDKAGNLTVQPRLNVVCKLTG
TPGLPTYIGDCSSSGKVTLTGPDISLKQITKSSKLKAKIELQHHKEVPAVEKNIVVTPSS
KAAKLEVFHEPVDGKLKKKVEDGQELPCVVGHMLTGLSFRILDEGQREVTIDYSLASRFK
VNWTPKVSKDLIKQGILPDIKAPFSCDEPKYCQVSMTGGAGLEFSFTIKPLADVPSILKC
LCDEPRLRLGEPLSSDIILSATDKHGNKTGKLPNNVLPEFHVSSDGLKESEVQLGFTADG
NIVIKNIQFENGPLGHRELSITWKEIKCYQRVEVTAGPPARLKILDINHSEPLSVYNDTR
MPVPLKVQLCDNLGNPSDEPNVKVVLNCDRGLKLTPTPAVQKTDDKGQASFGLLTVSAVR
GMYGIRIKALLGRTALDAPTVNIRVEPDPSKAVKLTVTFDSKAPCVVGELLPVVSAHVVG
EDEAVMKAASAKDIVLKIWHTKDGPVSDKPPPRATTLYPSKRKNSDKEGEFYFRDLKVPD
VSGPYCMVIQFGSVGVVTLSSKPITFTAMPGQPVKLEPESIPATPTVSNTQRTNSRTLVK
TLKLQLKDKFDNLTGESIRGKVVITVSTPSEGIDEIPALAGNVYRMEVPLLKGTANVQNL
LIQENTAGKDGQEYLLNFETQIPANASPHPIPPFTLAFLFYNDVRKQQQMAQLTKERDHL
FETIRTYRLLFETTRQLINEMQVSVHEASLHEQKIRGELRKQNIPASTLATPAAVTSAIN
DFSRKRDQIASTPRRQCLLHPGPRGDSGILGKVAHLAQVVDDDVARVLSWHMASDMDCVV
TLTTEKAKQVYRDSNGQQQVLPLDSIFRRSLPEWNRPLPHVRGSNNYTPTGNPVYARDML
LFPAEGDNCKLVFGMLLGDTLILDDLDCANKYRQEVVKYTHCPTILTRSGDRIRSNGKFG
GLQNKAPPLERMRGAVFAAPLPLAFHSFTTQIEQLQQFKQAVLKHAQAKEELSLQLQHGQ
TEEMKVKHRECREAETQLRMIEERLGMTPTQYNMPPSPATMLLTELSTPPARTATSRRAG
ARAAAAASASPTLLNSVVNGTNNTSANTSSPRTRRGAPVATEDIRFSKRTRR
NT seq
6099 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgtcaaataaagacgatacttcatcttccgagcaaagcgacgaggatgcagcc
gtttttatttatgatcgtagagctggcagcaggccggaagagaagatccagttaggcggc
atattcaattttaacactttcaaagaaaagacccgagtggctttcaatatcccagaaaac
gaaacatttgtgatagtgacaacaaatcgacaggaaatcctggatgacaggacttatgaa
gagttggttgatggtaatgaaacactgtatatcttgacatcgtccaaccaagaactgagt
gctccaacggaggagaaggtggaatatatccctcattatgacactttggtcaaaagtggc
atgtatgaatattatgctagcgaaggacaaaacccattaccatttgcctttgctgaactt
gtagacaatgctatggcagctactgcagaaaatgatggatccagagaaattgaaattaga
ttgatgtttgatgattccgttggaaaagctgtagtgtgtgtccttgataatggagctggc
atgacatcaaaagaactcaacaactgggctatttacaggctgtcaaagttcaatcgccag
actggaaagaaggttgtaggagatgtgccaaggtctttaaacagtgatatttcttacttt
ggtgttggtggaaaacaagccatattctttattggagatgccacaaggatgattactaaa
tccagagactgcagtgatattcatgaactttgtatttcgcaagctgaatttgagagaaga
gaaaaaaagaaacagtccatctatgggggagccattctcaacaggagggctggagatcac
caacacattccagaagatgaagaaagtgtgaagaaattagtagaggaagaggttcagaag
gagagtttcactgcagtagttattacaggaatagctccagaacatattctttatttgaag
acacatttcaaacaatggtgcagacaactggcgcacatatatcactactacattcatggt
ccccgtggaaatgagaagcctgttggaagaggaaccactgcaagtcctttcaggaatatt
gatattcatgtttctctgattgaaagaggtaaacaggccaagagaatgcaactacgagat
attgatgatgacatgcagacccagtacataaggacagcagcttctgtgtttgaattccgt
gctcgtgctgaatcaggaggagtggtagaaggtgtgctgcgttatcatccattcctttat
gacagagaaacatacccgactcttgaaggagaaattccagttgttgacaatgctgaagaa
ctggctgatccattggaaaaggacagcagagcacccagaggaagccgtccaatatttgag
tgttactggaatggaaggctcattccatatactaacattgatgttcttgaatggtgccag
cctccaaagaagtggacaattcccttggaatgttatcacagattttccggttgtttgtgg
acaaatgatgcatttcaagtcagcacaaacaaactgacatttatggatttagaggtcaaa
attaaagacaagaacaccattttcagcagggtcattctaggacaggagcaaagagtcaac
atttcaagagcattttatgattgggtcagagaatgtcatgaaaatcatgacaaacaggtc
aagttcttagggtttcaaggtcaaataaaacgtcctgacctgccacagaagcgaaaccag
agtccttggtgtgtttttaattctattgagtgggatggaaagatctttaaagttggacag
ctgataaggacacaaagaacactacctttgatttgtgggacggtaaagagatttcttctt
tttggtgatcatgatggagatgtatttgctactggaggagaaatggaaatagtgcaggag
ccagtttctttgtatggtgacaccaagttcttctcactggcaaagctagatcgaatgctg
aaccctgccttgatcaaaaagtttattgatgaggaagaagcaaagttaccaagtaaactg
gtgttagagtggccagagaacgacaaacttgaacctaactctaagataccagctggaacc
acaataggtgctattagggttgatattcacaatggtagaggagaatcagtcaacaaagtg
cctggtgacaggagaagattgttggttgaactaaaggtcatctggcatggtaatgacaaa
gatggtgataaagtgataaccaaccatgtctgccaacatggaggaaagaactggccttac
tggttcagaaaaatggagaatattacacatttaggtcctcatactctccaacttcaagtg
ttgttgggtgacacttcagctggttcttcaatcaagagtcttccttgtcaccgaatcaag
ttcactgtaacagaggctcacccaaataaatttacagttggaatgttggagacacctctt
agagttggagtacctttccagattcccctcaatttgttggatgaatttaataacccgtcc
aaattgacagaggagttgtctccaattttaaatgcaagtggtctggaacttgctcatcaa
gggacatcagtgaaaggaaacagcctgattgtcaaaggtgtaattgccttaggctctgtt
ccgtcacatgcaggcaaggacttcaatctaaagatcaccctgccaggtcttgaagaaggt
tcacagagcttgaaaatcaggttactaccaggtcctcctgaatcattagtagttactcct
gacagtgatgacatcacagttgaaaacaacagttctcttcagttgcaagtgcaagtccaa
gataaagctggcaaccttacagttcagcctagacttaatgttgtctgcaagctcacaggc
acaccaggtctacccacatacattggagactgtagctcttcagggaaagtaacattaaca
ggtcctgatattagtctaaagcaaatcaccaaaagttcaaaacttaaagccaagattgag
ctacagcatcacaaggaagtacctgctgtggaaaagaatattgtggtgacacccagcagt
aaagcagcaaaactggaagtgtttcatgaaccagttgatggcaaactaaagaagaaagta
gaggatggacaagagttgccatgtgtagtaggacacatgttgactggattaagttttaga
attctggatgaaggtcagagagaggttaccattgactactcattagcaagcaggtttaag
gtgaactggactcctaaagtctctaaagatctcatcaaacaaggaattcttccagacatt
aaggcacctttttcttgtgatgaaccaaagtattgtcaagttagcatgactggtggagca
ggacttgagttttctttcacaatcaaaccactggctgatgtgccaagcatcctcaagtgt
ttatgtgatgagccacgcctcagattaggggaaccattatcatccgatatcatcctgtca
gcaactgacaaacatggcaacaaaacaggcaagttaccaaataacgtgttaccagagttc
catgtttcctcagatggattaaaagaaagtgaagtacaattaggattcactgctgatggt
aatatagtaatcaagaacattcagtttgaaaatggcccccttggacacagagaactgtcc
attacatggaaggaaattaaatgttatcaaagagttgaggttacagcaggtccccctgcc
agactcaagattctggatattaaccattcagagccactgtcagtttataatgacactaga
atgccagtcccactcaaagtgcagttatgtgataaccttggaaacccttcagatgagccc
aatgttaaggtggtcctgaactgtgacagaggacttaagttgactccaacacctgctgtt
cagaagacagatgacaaaggtcaagcttcctttggtcttctcactgttagtgcagtaagg
gggatgtatggaatacgaatcaaagctctcctgggaagaacagctttagatgcaccaaca
gtgaatattagagtggagccagacccatccaaagctgttaaactcactgtcacatttgac
tccaaagctccatgtgtggttggagaactgttaccagttgtttcagctcatgttgtagga
gaggatgaagctgttatgaaagcagcaagtgctaaagatattgttttgaagatttggcac
acaaaggatggtccagtatctgacaaacccccacctcgggctacaactttgtatccatca
aaaagaaaaaactcagataaagaaggcgaattctacttcagagacctgaaggtgcctgat
gtgtctggaccatattgtatggtgatacagtttggatcagtaggagttgtcaccctctca
agtaaaccaatcacgtttacagcaatgcctggtcagcctgtgaaacttgaaccagaatcc
attccagcaacaccaactgtttccaacactcagaggactaacagccgaacactggtgaag
acactcaaattacagcttaaggacaaatttgataacctaactggtgagagtatccggggt
aaagttgttattacagtgagcactccatctgaaggcatcgacgagatccctgccctagct
gggaatgtgtaccgcatggaagtacccctcctcaagggcacggccaatgtccagaactta
cttatacaagaaaacactgcaggcaaagatggacaagaatacctgcttaactttgagact
cagatcccagctaatgcctctcctcatcctattccaccatttactcttgctttcttgttt
tacaatgatgtcaggaaacaacagcaaatggctcagctgacaaaagagagagatcactta
tttgaaacaattcgaacttaccgtcttctgtttgaaactacacggcaacttatcaatgag
atgcaagtttcagtacatgaagcatccttacatgaacaaaagattagaggagaacttaga
aagcagaacattccagccagtaccttggcaacacctgcagctgtgacgtcagctataaat
gatttctccaggaagcgagatcagattgccagcactccgcggagacaatgtcttttacat
ccaggaccacgaggagactcaggcatcctgggaaaggtcgctcatttagctcaagtagtg
gatgatgatgtagcacgggttttgtcatggcacatggcttctgatatggactgtgttgtc
actcttaccactgaaaaggccaagcaagtgtatcgtgattcaaatggtcagcagcaggtt
cttcccttggattccatattcagacgaagtttaccagaatggaacagaccgctgccacat
gtacgaggttcaaataactacactcccacagggaacccagtttatgctcgagatatgctg
ctattccctgcagaaggagacaactgcaaactcgtgtttggtatgttgcttggcgacact
ttgatccttgatgatctggattgtgcaaataaatacagacaggaggttgtgaagtacact
cattgtccaacaattttgacgaggagtggggatcgtatcaggagtaacgggaagtttggt
ggtcttcagaataaagctcctccgttagagagaatgcgtggcgctgtatttgctgcacca
cttccccttgcttttcattcatttacaacacaaatcgaacaactacagcaatttaaacaa
gccgttctgaaacatgctcaagccaaagaggaactttccctacagctacagcacggacaa
actgaggagatgaaagtcaagcatcgcgagtgtagagaggcagaaactcaactgcgcatg
attgaagagcgccttggtatgacaccaacacagtataatatgcctccaagtcctgccact
atgttactcacagagctcagcacaccaccagcaaggactgctacatctcgtcgcgcaggc
gcgcgagctgcagcagctgcctctgcgtctccaactttgttgaattcagttgtaaatgga
acaaataacacctctgcaaatacgagttctccgcgaacaagacgaggcgctcccgttgct
actgaagacatccgtttcagtaagcggacacggcgatga
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integrated database retrieval system
