Pocillopora damicornis (lace coral): 113679218
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Entry
113679218 CDS
T05773
Name
(RefSeq) TNF receptor-associated factor 6-like
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam04120
Ubiquitin mediated proteolysis
pdam04140
Autophagy - animal
pdam04144
Endocytosis
pdam04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113679218
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
113679218
04140 Autophagy - animal
113679218
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
113679218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pdam04131
]
113679218
04121 Ubiquitin system [BR:
pdam04121
]
113679218
Enzymes [BR:
pdam01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113679218
Membrane trafficking [BR:
pdam04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
113679218
Ubiquitin system [BR:
pdam04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
113679218
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
TRAF3_RING
zf-Nse
zf-TRAF_2
TMF_DNA_bd
zf-RING_5
zf-RING_4
zf-rbx1
DUF641
RING_XB3-XBAT31
zf-C3HC4_4
zf-RING_6
Sina_RING
TRAF6_Z2
DUF3450
ABC_tran_Xtn
CENP-H
Cnn_1N
Motif
Other DBs
NCBI-GeneID:
113679218
NCBI-ProteinID:
XP_027051971
LinkDB
All DBs
Position
Unknown
AA seq
371 aa
AA seq
DB search
MDARSRAAAALLLDFLERSENDEGDFEGDFDQELSDDLDDRSSDEEEQARPTFGGYEYEF
VDNVLDNQICPVCLLPMRDAVQTKECGHRFCKDCLHGILRSNHPVCPNDRQNIKRKGGFF
SDKAWARDILCLRVKCKQSATGCGWIGQLRHAEDHQKTCPYVEEQCRDCEANIQRRHLNT
HYKEECPKRLVECVHCQKKYRFMEKTVHEDFYCSRYPLSCTNNCGALQIPREELERHISE
QCPLTEVTCPYAKAGCPYKDKRVHLSRHMETSVDNHLWLTWYSLVETKQELGNLKDLRQK
YIKVQFVNERLTQSSAEFVGEIRDLSAAVKRLEAQNAKQVKQIEDLTRKLEKVQKPGKSY
SSRKNALNNSY
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgagaagcagagcggcggctgctttactgttagatttccttgaacgatccgag
aacgacgagggagactttgaaggagactttgatcaggaattaagcgacgatctcgatgat
cgtagcagcgacgaagaagaacaagcccggccaacgtttggaggctatgaatacgaattt
gtagataacgttttggacaatcaaatatgtccggtgtgccttttgcctatgagagacgct
gtccaaactaaagagtgcggccatcgattctgtaaagattgcttacacgggattctaaga
agtaaccatccagtttgtccgaatgacaggcagaacatcaaacgaaagggcgggtttttt
tcagacaaagcctgggctagggatattttgtgcctccgagtaaaatgcaaacagagcgcc
acaggatgtggctggattggtcaactgcgacacgcggaggaccaccaaaagacctgcccc
tatgtagaagagcagtgccgcgattgtgaagcaaacatacagagaagacaccttaatact
cattacaaggaggagtgcccaaaaagattggtggaatgtgtgcactgtcaaaaaaagtac
cgtttcatggaaaaaactgtacacgaggacttttattgtagccgttaccctctcagctgc
accaataattgtggagccttgcaaataccacgagaagagctggaaaggcacatttccgaa
caatgcccgttgactgaagtgacctgcccctatgccaaggccgggtgtccttataaggat
aagagagttcacctgagcagacacatggagaccagcgtggataatcacttgtggctgaca
tggtactcgctcgtggaaacaaaacaagagcttggcaatctgaaagatctgcggcagaaa
tatatcaaggttcagtttgtgaacgagaggctgacacagtcctctgctgagttcgtcgga
gagatccgcgatttatcggcagctgttaaacgattggaagcacaaaacgccaaacaagtg
aagcagatcgaagacttgaccagaaagcttgaaaaagttcaaaagcctggcaaatcttac
tcatcaaggaaaaacgcgcttaataattcctactga
DBGET
integrated database retrieval system
