Paracoccus denitrificans: Pden_0586
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Entry
Pden_0586 CDS
T00440
Name
(GenBank) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
pde
Paracoccus denitrificans
Pathway
pde00300
Lysine biosynthesis
pde00550
Peptidoglycan biosynthesis
pde01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pde00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Pden_0586
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Pden_0586
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pde01011
]
Pden_0586
Enzymes [BR:
pde01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
Pden_0586
Peptidoglycan biosynthesis and degradation proteins [BR:
pde01011
]
Precursor biosynthesis
Amino acid ligase
Pden_0586
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
LpxD
Motif
Other DBs
NCBI-ProteinID:
ABL68698
UniProt:
A1AZK4
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All DBs
Position
1:557715..559184
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AA seq
489 aa
AA seq
DB search
MRLSLLGLRGDKGRDPEVTGLAVDSRQVRPGHLFAALPGSATHGGEFIQYALRQGAGAIL
TDRKGAEIAAAELVGADAALVVAEDPRAALAGAAALWFAAQPETMVAVTGTSGKTSVASF
TRQIWQALGHKAISLGTMGVQGDYQAKLAHTTPEPITLHRVLAEAAAAGVTHAAMEASSH
GLDQRRLDGVRLKAGAFTNFSQDHLDYHKDFDEYFAAKALLFDHILEEGAGAVINIDDPR
GRQMAQIAGERGLKLTTIGKDERADLRILGQRYDATGQDLRFGFHGQAHLVRLALIGGFQ
AENVLAAAGLAIAAGDEAPRVIETLPGLTTVRGRMELAAVRENGAAVFVDYSHKPGALAS
ALQSLRPHVMGRIVVVFGAGGDRDRLKRPLMGEAARQFADVVYVTDDNPRSEDPAAIRAE
VMAGAGPDAIEVGDRAEAILRGVDALQPGDALLIAGKGHETGQIIGSDVYPFDDAEQASV
AVAALDGKI
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgcggctgtcccttttggggcttaggggggacaaggggcgcgaccccgaggtgacgggc
cttgccgtcgattcgcggcaggtcaggccgggccatctgttcgcggcactgccgggctcg
gccacgcatgggggcgagttcatccaatacgcgctgcgccagggcgccggcgcgatcctg
accgaccgcaagggcgccgagatcgcggcggccgagcttgtcggtgccgatgccgcgctg
gtcgtggccgaggacccgcgcgcagcactggccggcgctgccgccttgtggttcgcggcc
cagcccgagacgatggtcgccgtcaccggcacttccggcaagacctcggtcgccagtttc
acacggcagatctggcaggcgctgggccacaaggcgatcagcctgggcaccatgggcgtg
cagggcgactatcaggccaagcttgcccataccacgcccgagccgatcaccctgcatcgc
gtgctggccgaggccgccgctgcgggcgtcacccatgcggcgatggaggccagttcgcac
gggctggaccagcgccgtctggacggggtgcggctgaaggccggcgccttcaccaatttc
agccaggaccacctggactaccacaaggatttcgacgaatatttcgccgccaaggcactg
cttttcgaccatatccttgaagaaggcgccggggcggtcatcaatatcgacgatcctcgc
ggccggcagatggcgcagatcgcgggcgagcgtggcctgaagctgaccaccatcggcaag
gacgaacgggcggacctgcgcatcctcggccagcgctatgacgcgaccgggcaggatctg
cgcttcggcttccacgggcaggcgcatctggtgcggctggcgctgatcggcggtttccag
gcggaaaacgtgctcgccgcggccggccttgccatcgccgccggggacgaggcgccccgg
gtgatcgagaccttgccgggcctgaccaccgtgcgcggtcgcatggaactggccgcggtg
cgggaaaacggcgcggcggtcttcgtcgattacagccacaagcccggcgcgctggcctcg
gccctgcaatcgctgcgcccgcatgtcatgggccgcatcgtcgtggtcttcggcgccggc
ggcgatcgcgaccggctcaagcgcccgctgatgggcgaggcggcgcggcaattcgccgat
gtggtctatgtgaccgacgacaacccccgctccgaggatccggctgcgattcgtgccgag
gtcatggccggcgctggtcccgacgccatcgaggtcggcgaccgcgccgaggcgatcctg
cgcggcgtcgatgccctgcaaccgggcgatgcgctgctgatcgccggcaaggggcacgag
accggccagatcatcggcagcgacgtttaccccttcgacgatgccgagcaggcctcggtg
gccgtcgcggcattggatggcaagatatga
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