Pseudomonas denitrificans (nom. rej.): F1C79_12675
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Entry
F1C79_12675 CDS
T09478
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Pathway
pden03030
DNA replication
pden03410
Base excision repair
pden03420
Nucleotide excision repair
pden03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F1C79_12675 (ligA)
03410 Base excision repair
F1C79_12675 (ligA)
03420 Nucleotide excision repair
F1C79_12675 (ligA)
03430 Mismatch repair
F1C79_12675 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pden03032
]
F1C79_12675 (ligA)
03400 DNA repair and recombination proteins [BR:
pden03400
]
F1C79_12675 (ligA)
Enzymes [BR:
pden01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F1C79_12675 (ligA)
DNA replication proteins [BR:
pden03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F1C79_12675 (ligA)
DNA repair and recombination proteins [BR:
pden03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F1C79_12675 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F1C79_12675 (ligA)
MMR (mismatch excision repair)
DNA ligase
F1C79_12675 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F1C79_12675 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QEY72389
UniProt:
A0A9X7MZQ9
LinkDB
All DBs
Position
complement(2824367..2826760)
Genome browser
AA seq
797 aa
AA seq
DB search
MTDSQSAAERIAQLRSELDDHNYRYYVLDEPSVPDAEYDRLFRELKALEAEHPELITPES
PTQRVGGAAASAFGEVRHEVPMLSLGNAFEEQDLNDFDRRVREGLADQLPSSDLFGGGAE
VEYSCEPKLDGLAVSLLYENGVLTRGATRGDGTTGEDISVNVRTIRNVPLRLKGEGWPAV
LEVRGEVFMSKAGFDALNERQMEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGF
GRVEGGALPGTQVDILEALKGWGIPISRELKLARGVEGCRAYYEDIGARRDSLAYEIDGV
VFKVNRIDYQRELGFRAREPRWAIAHKFPAREELTELLDVEFQVGRTGAVTPVARLKPVQ
VAGVTVSNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVMQVVAERRPADARPVAIPTQ
CPVCGSQVERTQLVKRSKGKESVSEGAIYRCVGRLFCQAQLKQAIIHFVSRRAMDIDGLG
DKIVEQLVDKGLVKSPADLYTLTFEQVIELEGFAEVSTRNLLAAIADSRRPALARFVFAL
GIPDVGEETAKLLARSLGSLARIQKALPEVLTYLPDVGGEVAYEIHNFFDDEHNRSVIAE
LQNPEHGVQLQDEGEVSAEFAAVATLAGFIDKLNIPFIAATGAEKLADRTGSLDALITLS
QDWLDLSTLKGVNEKAKQSVREYFADAARVERAKAVEAQLAEFGMHWRSERKVVEGLPLA
GQTWVLTGTLEAMSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKAQELGVAV
MDEEQLIKLLADHGLGA
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgaccgactcccaatccgctgccgaacgcattgcccagctgcgcagcgaactcgacgac
cacaactaccgctactacgtgctcgacgagccgagcgtgccggacgccgagtacgaccgc
ctgttccgcgaactgaaggcgctggaagccgagcatcccgaactgatcacccccgaatcg
ccgacccagcgcgtcggcggtgcggccgcctcggccttcggtgaggtgcgtcatgaagtc
ccgatgctcagcctgggcaacgccttcgaggagcaggacctcaacgacttcgatcgccgt
gtgcgtgaaggcctggcggaccagttgccatcttccgacctgttcggcggcggcgccgaa
gtggagtacagctgcgagcccaagctcgacggcctggcggtcagcctgctgtacgagaac
ggcgtgctgacccgcggcgccacccgtggcgacggcaccaccggcgaggacatcagcgtc
aacgtgcgcaccatccgcaatgtgccgctgcgcctgaagggcgagggctggccggcggtg
ctggaagtgcgtggcgaggtcttcatgtccaaggcaggtttcgacgcgctcaacgagcgg
cagatggaagccggcggcaagacattcgccaacccgcgcaacgccgcggccggcagcctg
cgccagctggattcgaagatcaccgccagccgcccgctggagttctgctgctacggtttc
ggtcgcgtcgagggcggcgcgctgcccggtacccaggtcgatatcctcgaagccctcaag
ggctggggcattccgatcagccgcgagctgaaactggccaggggtgtcgaaggctgccgc
gcctactacgaagacatcggtgcccgccgcgacagtctcgcctacgagatcgacggcgtg
gtgttcaaggtcaaccgcatcgactaccagcgtgaactgggcttccgtgcccgcgagccg
cgctgggccatcgcccataaattcccggcccgcgaagaactgaccgaactgctcgacgtg
gaattccaggtcggccgtaccggtgcggtaacgcccgtggcgcgtctgaagccggtgcag
gtggctggcgtgaccgtatccaatgccacgctgcacaacatggacgaggtcgcccgcctg
ggcctgatgatcggcgataccgtgatcattcgccgtgccggcgatgtgattccgcaggtc
atgcaggtcgtcgccgagcgccgtccagcggatgctcgtccggtggcgatccccacccag
tgcccggtatgcggctcgcaggtcgagcgcacccagctggtcaagcgcagcaagggcaag
gagtcggtcagcgaaggtgccatctaccgttgcgtcggccggctgttctgccaggcgcag
ctcaagcaggcgatcatccatttcgtctcgcgccgcgccatggacattgacggtctcggc
gacaagatcgtcgagcaactggtggacaagggcctggtgaagtccccggccgacctctac
accctgaccttcgagcaggtcatcgagctggaaggcttcgccgaagtctccacgcgcaac
ctgctcgcggccatcgccgatagccgcaggcccgcgctggcgcgcttcgtcttcgccctg
ggcatcccggacgtcggcgaggaaaccgccaagctgctggcgcgctccctgggctccctg
gcgcgcatccagaaggcgctgccggaagtgctcacctacctgccggacgtcggcggcgaa
gtggcctacgagatccacaacttcttcgatgacgagcacaaccgcagcgtgatcgctgag
ctgcagaatccagagcatggcgtccagttgcaggacgaaggcgaggtttccgccgagttc
gccgccgtcgccactctggcgggcttcatcgacaagctgaacatccccttcatcgccgct
accggcgccgagaagctggccgaccgcacgggcagtctcgacgcgctcatcaccctcagc
caggactggctcgacctcagcaccctcaagggtgtgaacgagaaggccaagcagtcggtg
cgcgagtacttcgccgatgccgcccgcgtcgagcgcgcgaaggcggtcgaagcgcagctg
gcggagttcggcatgcactggcgcagcgagcgcaaggtggtcgaaggcctacccctggcc
ggccagacctgggtgctgaccggcaccctggaggccatgagccgcgacgtcgccaaggaa
aagctcgagagcctgggcgccaaggtggccggttccgtctcggccaagacccactgcgtc
gttgcaggaccgggagcgggttcaaagttggccaaggcccaggaacttggcgtcgccgta
atggacgaagagcagctgatcaagctgctggccgaccatggcctcggcgcctga
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