Peteryoungia desertarenae: FE840_015495
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Entry
FE840_015495 CDS
T07298
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pdes
Peteryoungia desertarenae
Pathway
pdes03030
DNA replication
pdes03410
Base excision repair
pdes03420
Nucleotide excision repair
pdes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FE840_015495 (ligA)
03410 Base excision repair
FE840_015495 (ligA)
03420 Nucleotide excision repair
FE840_015495 (ligA)
03430 Mismatch repair
FE840_015495 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdes03032
]
FE840_015495 (ligA)
03400 DNA repair and recombination proteins [BR:
pdes03400
]
FE840_015495 (ligA)
Enzymes [BR:
pdes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FE840_015495 (ligA)
DNA replication proteins [BR:
pdes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FE840_015495 (ligA)
DNA repair and recombination proteins [BR:
pdes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FE840_015495 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FE840_015495 (ligA)
MMR (mismatch excision repair)
DNA ligase
FE840_015495 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FE840_015495 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
Lar_restr_allev
HHH
DZR_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QLF70832
LinkDB
All DBs
Position
complement(3172462..3174615)
Genome browser
AA seq
717 aa
AA seq
DB search
MAVDLVAVEDLTEEQAVLELQRLAAEIAHHDALYHGKDAPQITDADYDALKRRNDAIEER
FPGLVRSDSPSQRVGAAPAGIFAQVVHARPMLSLDNAFSDEDVTDFVSSVYRFLGQLPDG
SIAFTAEPKIDGLSMSLRYENRKLVTAATRGDGTTGENVTANIRTITEIPTELPADAPDV
VEVRGEVYMAKSDFLALNALMEAEGKQTYVNPRNTASGSLRQLDPKVTASRKLRFFAYAW
GEMSEMPAETQWGMVETFNRWGFPVNPLTRRLNSVEEILAHYRDIGLQRAELDYDIDGVV
YKVDRLDLQARLGFRSRSPRWATAHKFPAEQATTRLLAIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNEDYIKGIGNSGEPLRDGRDIRVGDMVIVQRAGDVIPQIVDVVMDQRPD
EAVSYVFPKNCPVCGSHAVREKNEKTGKLDSVTRCTGGFVCRAQAIEHIKHFVSRNAFDI
EGLGTKQVDFFFESEDPALMIRTAPDIFTLKTRQERSLTKLENIEGFGRVSVGKLFDAID
ARREIALNRFIFALGIRHVGETTAKLLARSYGSYTAFAAAMQGAGPRYGEAWNELNNIEG
IGEVVAASIVEFFKEPRNLQVVGRLLDEVTPLDAEMPVASNSVVAGKTVVFTGSLERFTR
DEAKARAESLGAKVAGSVSKKTDYVVAGPGAGSKLDKARELGVAVMTEDEWLSLIGG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgatcttgttgccgtcgaggacctcacagaagaacaggcggttcttgagctt
cagcgactggccgccgagattgcccatcacgatgcgctctatcacggcaaggacgcgccg
cagatcacggatgccgattacgatgcgctcaagcggcgcaacgacgccatagaagagcgg
tttccgggacttgtccgcagcgatagtccctcccagagagtgggggctgcgcccgccggc
atctttgcccaggtcgtgcatgcgcgccccatgctgtccctcgacaatgcgttttcggac
gaagacgtcacagattttgtgtcctcggtctaccgatttcttgggcaacttcctgacggc
tcgatcgcctttactgcagagccaaaaatcgacgggctttccatgtcgctgcgctacgag
aaccgcaagctggtgacggcggcgacgcgcggtgacgggacgaccggcgagaatgtcacc
gccaatatccggaccatcacggaaatcccgaccgaactgcctgctgatgcgcccgatgtg
gtcgaggtgcgcggtgaagtctatatggcgaaatccgatttcctggcgctgaatgcgctg
atggaggccgagggcaagcaaacctatgtcaatccgcgcaatacggcgtccggctcgctt
cgccagcttgatcccaaggtaacggcgagccgcaagctgcgcttttttgcctatgcctgg
ggcgagatgagcgagatgccggcggagacgcaatggggcatggttgagaccttcaatcgc
tggggcttcccggtcaatccgctgacgcggcgtctgaactcggttgaagagatactcgcc
cattaccgcgacatcggcctgcaaagagcagagctcgactatgacatcgatggtgtggtc
tacaaggttgaccggctcgatcttcaggcgcggcttggttttcgttcgcgctcgccgcgc
tgggccacggcccacaagttcccggccgagcaggcgacgacacggctccttgccatcgac
attcaggtgggacgaacgggggcgctgacgcccgttgcccggcttgagccgatcactgtc
ggtggtgtcgtcgtgacgaatgcaacgctccacaacgaggactatatcaaggggatcggc
aattcgggcgaaccgctccgcgacgggcgcgacatccgtgtcggggacatggtcatcgtg
cagcgggcgggtgatgtcattccacaaattgtcgatgtggtcatggaccaacgcccagat
gaggctgtgtcctatgtgtttccgaagaactgtccggtttgcggaagccatgctgtgcgg
gaaaagaacgagaaaaccggcaagctcgattccgtaacccgctgcacagggggcttcgtc
tgtcgtgcccaggcgatcgagcacatcaagcacttcgtctcgcgcaatgccttcgacatt
gaggggctggggaccaagcaggttgatttcttcttcgagagtgaggacccggcgctgatg
atccgtacggcgcctgatatattcactctcaagacccggcaggaacgctccctgacaaag
ctggagaatatcgaggggtttgggcgcgtgagtgtcggcaaattgttcgatgccatcgat
gcgaggcgagagattgccctcaaccgcttcatctttgcgctcggcattcgccatgtcgga
gaaacgacggcgaagcttctggcacggtcatacggctcctacactgccttcgcggcggcc
atgcaaggggccggccctcgatacggcgaggcctggaacgagttgaacaacattgaaggc
atcggcgaggtcgtggcggcctccattgtcgaattcttcaaggagcctcgtaatctccag
gtggtgggccgtctgctggacgaggtcactccgctcgatgccgagatgcctgtcgccagc
aatagcgttgttgctggtaagaccgtcgtttttactggctcattggaacgcttcacgcgg
gacgaagccaaggcacgggcggaaagtctcggagccaaggttgcaggctccgtatccaag
aagaccgactatgtggtggcgggccccggcgccggctcaaagctcgacaaggcgcgggaa
ctgggcgtcgctgtcatgaccgaagatgagtggctgagcctgattggcggataa
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