Paenibacillus donghaensis: B9T62_28925
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Entry
B9T62_28925 CDS
T04971
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pdh
Paenibacillus donghaensis
Pathway
pdh03030
DNA replication
pdh03410
Base excision repair
pdh03420
Nucleotide excision repair
pdh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B9T62_28925
03410 Base excision repair
B9T62_28925
03420 Nucleotide excision repair
B9T62_28925
03430 Mismatch repair
B9T62_28925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdh03032
]
B9T62_28925
03400 DNA repair and recombination proteins [BR:
pdh03400
]
B9T62_28925
Enzymes [BR:
pdh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B9T62_28925
DNA replication proteins [BR:
pdh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B9T62_28925
DNA repair and recombination proteins [BR:
pdh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B9T62_28925
NER (nucleotide excision repair)
GGR (global genome repair) factors
B9T62_28925
MMR (mismatch excision repair)
DNA ligase
B9T62_28925
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B9T62_28925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
DNA_ligase_ZBD
Nlig-Ia
DUF669
Motif
Other DBs
NCBI-ProteinID:
ASA24421
UniProt:
A0A2Z2KU04
LinkDB
All DBs
Position
complement(6342326..6344338)
Genome browser
AA seq
670 aa
AA seq
DB search
MDVMHTMEELVEELNQHNYHYYTLDAPQLSDKEYDLLYDKLVALEAESGLVLPHSPTQRV
GGELLKGFTPHRHLAPLWSLDKAQNIEQLRNWNARVLRLVNDYNTKNPDTPLPEPCYAVE
LKFDGLTLNLTYRDGVLVQAATRGNGVTGEGILAQVKTIKSVPLTLPFQSGVIEVQGEGI
MNLSVLADYNTRAAEPLKNARNGAAGALRNLNPQTTASRRLNAYFYNVGYAEGVDFADHQ
QMMDFLRTNRFKVNPYLTYFNTFDDVTEQLAEIEESRAGLDYLIDGAVIKVTDFRIREVL
GYTDKFPRWAVAYKFEAEETTTILESVSWNVGRTGKVTPLARVEAVELAGVTVQNCTLNN
VGDIERKNLKHALGTRVFIRRSNDVIPEILGKVTEESDGGEIIFPEACPACGFPLEMRGA
HLFCNNKLDCRPQIIARITHFASRDAMDIETFSDKTAGQLHDELNVREPADLYELDFEQL
VKLDRFGERKAQNLLKALEDSKGRDLASFLYALGIPNTGKATTRMLADHYRDLGAVMQAD
AEELAALPDIGGIVAESIVGFFADPFVVTSINRMLELGVEAKAPEAPRVVSADSFFSGKT
VVLTGSLQKLTREDAAERLEALGAKVSGSVSKKTDLVIAGEKAGSKLAKAQQLGIRVIED
EDEFIRLLEE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggatgttatgcatacaatggaagagctggtcgaggagctgaatcagcacaattatcat
tactatacgctggatgcgccgcagctcagcgacaaggaatatgacttgctctacgacaag
ctggtagcgctggaggccgaaagcggccttgtgctgccccattcacccacccagcgtgtg
ggcggcgagctgctgaagggcttcactccgcaccgccatctggcaccgctgtggagcctg
gataaagcgcagaatattgagcagctgcgtaattggaatgcacgggtgctccgtctggtc
aatgactacaatactaagaaccccgatactcccctgcctgagccttgttatgccgttgaa
ctgaagttcgacgggctgacgcttaacctcacctaccgtgacggcgtgctggtgcaggcg
gcaacccgcggcaacggagtgacgggggaagggattctggcacaggtgaagacgatcaaa
tcggtgccgctgacccttcctttccaatcgggggtgatcgaggtgcagggagagggcatt
atgaacctctctgtactggctgattacaacaccagagcggcagagccactgaagaatgcg
cgcaacggtgcagctggtgccctgcgcaatcttaatccgcagacgacagccagccgcagg
cttaacgcctacttctataatgtcggttatgcggaaggggtagacttcgccgaccatcaa
cagatgatggatttcctgcggaccaaccggtttaaggtcaatccttatctgacctatttc
aatacctttgacgatgtcacagagcagctggcagagatcgaggagagccgtgcgggcctg
gattatctcattgacggtgccgttatcaaggttacggatttccgtatccgtgaggtgctc
gggtataccgataagttcccgcgctgggcggtggcgtataagttcgaggctgaagagacg
accaccattctggaatcggtcagttggaatgtgggccggaccggcaaggtgactccgctg
gcccgggtagaggccgtggagcttgccggggttaccgtgcagaattgcacgcttaacaac
gtaggggatattgagcggaagaatctgaagcatgcgctcggtacccgggtgttcatccgc
cgctccaacgatgtcattccggaaattctcggcaaggtgaccgaggaaagcgacggcgga
gagattatattccctgaagcttgtcctgcctgcggattcccgctggagatgcgcggggcc
catctgttctgtaacaacaagctggactgcagaccgcagattatcgcgcggattacccat
ttcgcctcacgggatgcaatggatattgagacgttcagtgacaagaccgcaggacagctg
catgatgagctgaatgttcgcgagcctgccgatctgtatgagctggatttcgaacagctg
gtgaagctggaccgcttcggggagcgcaaggcccagaacctgctgaaggcgctggaggac
agcaaggggcgtgatcttgcttcgttcctgtacgcactgggaattccgaacaccggcaaa
gcgacaacccgtatgctggccgaccattaccgtgatcttggcgcagtgatgcaggccgat
gcagaggagcttgcggcgctgccggacattggcggcattgtcgctgagagtattgtaggc
ttcttcgccgatccgtttgtagtcacatcgattaaccgcatgctggagctgggcgtggaa
gccaaggcgccagaggcgccgcgcgtggtaagtgcggattccttcttcagcggtaagacc
gttgtgctgaccggttcgctgcagaagctgacccgtgaggatgcagcggaacgcttggag
gcactgggggccaaggtctcaggcagtgtctccaaaaaaacagatctggttatcgccggc
gagaaggccggcagcaagctggccaaggcgcagcagctgggtatccgggttattgaggat
gaggacgaattcatccgactgctggaagaatag
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integrated database retrieval system
