Paraburkholderia dioscoreae: PDMSB3_2601
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Entry
PDMSB3_2601 CDS
T08115
Symbol
ligA
Name
(GenBank) DNA ligase, NAD(+)-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03030
DNA replication
pdio03410
Base excision repair
pdio03420
Nucleotide excision repair
pdio03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PDMSB3_2601 (ligA)
03410 Base excision repair
PDMSB3_2601 (ligA)
03420 Nucleotide excision repair
PDMSB3_2601 (ligA)
03430 Mismatch repair
PDMSB3_2601 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdio03032
]
PDMSB3_2601 (ligA)
03400 DNA repair and recombination proteins [BR:
pdio03400
]
PDMSB3_2601 (ligA)
Enzymes [BR:
pdio01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PDMSB3_2601 (ligA)
DNA replication proteins [BR:
pdio03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PDMSB3_2601 (ligA)
DNA repair and recombination proteins [BR:
pdio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PDMSB3_2601 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PDMSB3_2601 (ligA)
MMR (mismatch excision repair)
DNA ligase
PDMSB3_2601 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PDMSB3_2601 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
MctB
BRCT_2
5_3_exonuc
DUF4874
Hint
Motif
Other DBs
NCBI-ProteinID:
VVD29057
UniProt:
A0A5Q4ZD06
LinkDB
All DBs
Position
I:complement(2680573..2682639)
Genome browser
AA seq
688 aa
AA seq
DB search
MARTPVSPPATSAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDRLFKELESIETEHP
DLIVPDSPTQRVGGEAASGFEPVVHEQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPP
VPVEYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLRLKGKRVP
QVLDVRGEVLMFKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLDSKITAQRPLSFFSY
GIGVLEGMDMPATHSELLDWYKELGLPVNGERAVVHGAEGLLGFFHAVGEKREKLPYDID
GVVYKVNRRDEQEALGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEP
VFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALLDRRPDDAREFVMP
THCPVCGSNIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQ
NLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTA
KDLAKHFGSLDPIMEASVEALLEVNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGRVTWP
EGPPAPRAPQGVLAGKTVVLTGTLPSLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEA
GSKLAKAEELGIPVLDEDGMRKLLEGQL
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccccgtctcaccccccgcaaccagcgccccggcagagcgtgccgcgtgg
ctgcgcgcggaactcgaacgcgccaattacgcgtactacgtgctcgaccagccggatctg
cccgacgcggaatacgaccggctgttcaaggaactcgagagcatcgagacggaacatccc
gacctgatcgtgccggattcgcccacccagcgggtgggcggcgaggcggcaagcggtttc
gagccggtcgtgcacgagcagcccatgctgtcgctgaacaacggtttcgcggacgaggac
atcgtcgcgttcgacaagcgcgttggcgacgcgctcggcaagaatgcgagcgagcccccg
gtgccggtcgaatacgcggccgagctgaagttcgacggtctcgccatttcgctgcgttat
gtcgacggcgtgttcgtccaggcgtccacgcgcggcgacggcacgaccggcgagaacgtt
accgaaaacgtccgcaccatccgctccattccgctcaggctcaaaggcaaacgcgtgccg
caggtgctcgacgtgcgcggcgaagtgctgatgttcaagcgcgatttcgaacgcctgaac
gaacgccagcgggccgcggaacagaaggaattcgccaatccgcgcaatgcggcggcgggc
agcttgcggcagctcgattcgaagatcaccgcgcagcggccgctgtcgtttttctcttac
gggatcggcgtgctcgaaggcatggacatgccggccacgcatagcgaactgctcgactgg
tacaaggaactcggcttgccggtgaatggcgaacgggcggtggtgcacggcgcggagggt
ttgctgggctttttccacgccgtgggcgaaaagcgcgagaagctgccgtacgacatcgac
ggtgtggtctacaaggtcaaccggcgcgatgagcaggaggcgctcggcttcgtgtcgcgc
gcgccgcgttttgcgctggcgcacaaattccccgcgcaggaagcgctcacgcggctcgtc
gcgatcgacgtgcaggtcggccgcaccggtgcgatcacgccggtggcgcggttggaaccg
gtgttcgtgggcggcgcgacggtcacgaatgccacgctgcacaacgaagacgaagtgcgg
cgcaaggatattcgcatcggtgacaccgtgatcgtgcggcgtgccggcgacgtgattccc
gaagtagtgagcgcgctgctcgaccggcgtcccgacgacgcccgcgaattcgtgatgccc
acgcattgcccggtatgcggctcgaacatcgagcggctgccggacgaggcgattgcgcgc
tgtaccggcggcctgttctgtcccgcgcagcgcaagcaggccttgtggcatttcgcgcag
cggcgcgcgctggatatcgacggcctcggcgaaaagatcatcgatcaactggtcgagcag
aatctggtgcgtacaccggccgatctattcaacctcggctttgcgacgctcgccgaactc
gaccgctttgccgagaaatccgcgcagaacctgctcgattcgctcgaaaaggccaagcac
accacgttggcgcgctttatttacgcgctcggcattcgccatgtgggcgagtccacggcg
aaagacctggccaaacatttcggctcgctggatccgatcatggaggcttcggtggaagcc
ttgctggaagtcaacgacgtcgggccggtagtggccgagtcgattcatcagttcttcgcc
gaagagcacaaccgcacggtgatcgagcaactgcgcgcgccgggccgggttacgtggccg
gagggtccgcccgcgcctagagcgccgcaaggcgtgctggccggcaagacggtcgtgctg
accggcaccttgccgagcctcgcccgcgaagaagcgaaggaaatgctggaagccgcaggc
gcgaaagtggcgggatccgtgtcgaagaaaacggattatgtggtggcgggggccgaagcc
ggcagcaagttggcgaaggccgaggaactcggcatccccgtactcgacgaagatggtatg
cgtaagctcctggaggggcagttatga
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