Candidatus Pantoea soli: D8B20_12260
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Entry
D8B20_12260 CDS
T06714
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pdis
Candidatus Pantoea soli
Pathway
pdis03030
DNA replication
pdis03410
Base excision repair
pdis03420
Nucleotide excision repair
pdis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D8B20_12260 (ligA)
03410 Base excision repair
D8B20_12260 (ligA)
03420 Nucleotide excision repair
D8B20_12260 (ligA)
03430 Mismatch repair
D8B20_12260 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdis03032
]
D8B20_12260 (ligA)
03400 DNA repair and recombination proteins [BR:
pdis03400
]
D8B20_12260 (ligA)
Enzymes [BR:
pdis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D8B20_12260 (ligA)
DNA replication proteins [BR:
pdis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D8B20_12260 (ligA)
DNA repair and recombination proteins [BR:
pdis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D8B20_12260 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D8B20_12260 (ligA)
MMR (mismatch excision repair)
DNA ligase
D8B20_12260 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D8B20_12260 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
DUF4874
HHH
5_3_exonuc
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QDY42614
UniProt:
A0A518XEJ4
LinkDB
All DBs
Position
complement(2625448..2627466)
Genome browser
AA seq
672 aa
AA seq
DB search
MKSVQEHITALRTSLRHHEYLYHVMDAPEIPDAEYDRLMAQLRELEQAHPDLITPDSPTQ
RVGAAPLTTFEQVRHEVPMLSLDNTFDEAGFLAFNKRVQDRLKSSDELTYCCELKLDGLA
VSLLYENGLLVRAATRGDGTTGENITANVRTIYAIPLRLQGDNIPARLEVRGEVFMTQSG
FEKLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEMPGSHW
QRLQQFRAWGLPVSDRIRLVHTAEEVLAFYRQVEQDRPSLGFDIDGVVIKVDSSAQQAQL
GFVARAPRWAVAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLHN
ADEVARLGLRIGDKVVIRRAGDVIPQVVNVVESERPQDTREIVFPSHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVKTPADLFRLTAG
KLTGLDRMGPKSAQNIVDALEKAKLTTLPRFLYALGIREVGEATAANLANHFGDLQKVMD
ADLEALIAVQDVGKVVAAHVRNFMEEESNREVIRQLTEEAGIHWPQVVAVKAEEIDSPFA
GKTVVLTGSLSQMNRDDAKARLTALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIAV
IDEAEMIRLLGA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcggttcaggagcacatcaccgcactgcgtacctcgttacgtcaccacgaatat
ctttatcacgtgatggatgcgccggaaattccggacgccgaatacgaccggttgatggcg
cagctgcgtgaactggagcaggcgcatccggatttgattacgccggattcgcccactcag
cgcgtcggtgccgcgccgctcaccacctttgagcaggtgcgccatgaagtgccgatgctc
tctctcgacaatacctttgacgaagccggttttctggccttcaacaagcgtgtgcaggat
cgcctgaaaagcagtgatgaactcacctactgctgtgagctgaaactggatggccttgcc
gtcagcctgctgtatgaaaacggactgctggtgcgtgccgccacgcgcggtgatggcact
accggtgagaacatcaccgccaacgtccgcaccatttacgccattccgctgcggttgcag
ggcgataacattccggcgcgcctcgaagtacggggtgaagtgtttatgacgcaaagcggc
tttgaaaagctcaatgaggaagcgcgtcgcaccggcggtaaagtctttgccaacccgcgc
aatgcggcggccggctcgctgcgtcagctcgatccgcgcattacggcgaagcgtccactg
acctttttctgctacggttttggcctgctggaaggcggggaaatgcccggcagtcactgg
cagcgtctgcagcagttcagggcgtgggggttgccggtaagcgatcggatccgtctggtg
cataccgccgaagaggtactggcgttctaccgccaggttgagcaggatcgcccgtcgctc
ggcttcgatattgatggcgtggtgatcaaagttgactcttcagcgcagcaggcgcagctg
ggctttgtcgcccgcgcgccgcgctgggccgtggcatttaaatttccggcgcaggagcag
atgacggtggtgcgcgacgtggagtttcaggttggacgcaccggcgcgatcacgccggta
gcccgactggaaccggtgcaggtcgccggcgtggtggtcagtaacgcgacgctgcataac
gccgatgaagttgcgcgtcttggcctgcgcatcggcgataaagtggtgatccgccgcgcc
ggtgatgtgatcccgcaggtggttaacgtggtggaatcggaacgcccgcaggacacgcgt
gagattgttttccccagccattgcccggtgtgtggttcagatgtagagcgcgtcgagggc
gaagcggtcacgcgctgcaccggcggcctgatttgcggcgcgcagcgtaaagaggcgctc
aagcattttgtttcccgccgcgcgatggacgtggatggcatgggcgacaagattatcgac
cagctggtggaaaaagagtatgtcaaaacgccggcggacctgttccgcctgaccgccggg
aagctgaccggattggatcgcatggggccgaaatcggcacagaacatcgtcgatgcgctg
gaaaaagcgaagctgaccacgctgccacgtttcctttatgcgctgggtatccgcgaagtg
ggtgaggccacagcggctaacctggccaaccattttggcgatctgcaaaaggtcatggac
gccgatctggaggcgctgattgcggtgcaggatgtgggtaaagtggtggccgcccacgtg
cgtaacttcatggaagaagagagcaaccgcgaagtcattcgccagctgacggaggaggca
ggcatccactggccgcaggtcgtggcggtgaaggcagaagagatcgacagcccgtttgcc
ggcaaaaccgtggtgctgaccggttcgctgtcacagatgaaccgcgatgacgccaaagcc
cggctgacagcgctgggagcaaaagtcagcggcagcgtctcaaagaaaaccgatctgctg
atcgccggggaagccgccggctccaagctggctaaagcgcaggagctgggcattgcggtg
attgacgaagccgagatgattcgcctgctcggagcctga
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integrated database retrieval system
