Pseudoalteromonas lipolytica: D0907_06050
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Entry
D0907_06050 CDS
T05890
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pdj
Pseudoalteromonas lipolytica
Pathway
pdj03030
DNA replication
pdj03410
Base excision repair
pdj03420
Nucleotide excision repair
pdj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D0907_06050 (ligA)
03410 Base excision repair
D0907_06050 (ligA)
03420 Nucleotide excision repair
D0907_06050 (ligA)
03430 Mismatch repair
D0907_06050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdj03032
]
D0907_06050 (ligA)
03400 DNA repair and recombination proteins [BR:
pdj03400
]
D0907_06050 (ligA)
Enzymes [BR:
pdj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D0907_06050 (ligA)
DNA replication proteins [BR:
pdj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D0907_06050 (ligA)
DNA repair and recombination proteins [BR:
pdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D0907_06050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D0907_06050 (ligA)
MMR (mismatch excision repair)
DNA ligase
D0907_06050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D0907_06050 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AXV64880
UniProt:
A0AAD0RYE5
LinkDB
All DBs
Position
1331254..1333275
Genome browser
AA seq
673 aa
AA seq
DB search
MSSPIFEQISQLRAQLEEHNHNYYVLDAPSIPDAEYDRLMRELSSLEQANPEFQSPDSPS
QKVGGAALDKFEQVTHQVPMLSLDNAFSQEEFAAFNRRIKERVMDSRELTFCCEPKLDGL
AVSIIYRNGVLVQAATRGDGMVGENITQNVKTIRNVPLKLRGNDFPAELEVRGEVFMDSA
GFAKLNSDAEKRGEKVFVNPRNAAAGSLRQLDSKVTAKRPLMFYAYSTGLVADGQLPEDH
YQQLAKLTDWGLPLCPETKLVEGQQAALDYYQDILARRSELAYEIDGVVIKVNDKKLQER
LGFVARAPRWAIAFKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLH
NGDEIARLGVKIGDTVIIRRAGDVIPQITQVVLERRPESAREIVFPTTCPICDSHVERIE
GEAVARCTGGLVCQAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQ
GHFESLERMGPKSAKNLVNALQEAKETTLAKFLYSLGIREVGEATAQNLANHFLTLEKIT
QASVDALTEVSDVGEIVAKHVRGFFSEEHNMAVVNALIEQGIHWPALNAPSAEKQPLAGL
TYVLTGTLSELNRNDAKARLQALGAKVSGSVSAKTNALIAGEKAGSKLTKAQELGIEVLT
EADLIALLSEHNG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgtccagccctatctttgagcaaattagtcaactacgtgcccagttagaagagcataac
cataattattatgtgctggatgcacccagtattcccgatgctgaatatgaccgcttaatg
cgagaactaagtagcttagagcaagcaaatcctgagtttcagagccctgattcacccagc
caaaaagtgggtggagccgcgcttgataaatttgaacaagtaacccaccaagttcctatg
ttgtcgcttgataatgctttttcacaagaagagtttgcggcgtttaatcgccgaattaaa
gagcgcgtgatggattcccgcgaactcacattttgctgcgaaccaaagcttgacggttta
gctgtgtcgattatttatcgtaatggtgtgctggttcaagctgcaacacgtggcgatggt
atggtgggtgagaacattacacaaaacgtgaaaacgattcgtaatgtgccattaaaactt
cgcggcaatgactttcctgctgaacttgaagtacgcggcgaagtatttatggacagtgca
ggctttgcaaaactgaacagcgacgctgaaaagcgaggcgaaaaggtatttgttaaccct
cgtaatgctgcggctgggagtttacgtcagctcgattctaaggtaacggcaaaacgccca
ttaatgttttatgcatacagcacagggctggtggctgatgggcaattgccagaagatcat
taccaacaactggcaaaattgactgattggggattaccactttgccctgaaactaagtta
gttgaaggtcaacaggcggcgcttgattattaccaagacatcttagcgcgccgaagtgag
cttgcctatgaaattgacggagtggttattaaggtcaacgacaaaaagctccaagagcgc
ttgggctttgttgcccgcgccccccgttgggctattgcgtttaagtttccagctcaagaa
gaaattacacaacttttagatgttgaattccaagtaggccgaacgggtgcaattacaccg
gtagcacgtttggagcccgtatttgttggcggagtgactgtatcgaatgccactttgcat
aatggggatgaaatagcccgtttaggcgttaaaattggcgatacggtgattattcgccgc
gcaggcgatgtaatccctcaaattacccaagtggtactggagcgtcgtcctgagagtgca
agagagattgtattcccaaccacttgtccaatttgtgactcgcatgtagagcgtatcgag
ggtgaagcagttgcacgatgcaccggtgggttggtgtgccaagcacaacgtaaacaagca
attaagcattttgcttcacgtaaagcgcttgatattgacgggttaggagacaaaattgtt
gaccaattagtcgatcgtgagcttatcaaaacgcctgctgatttatttattttaaaacaa
ggtcactttgagtcacttgaacgaatggggccaaagtctgctaaaaatttggtgaatgcg
ctgcaagaggcaaaggaaactaccttagctaaatttctttactctttgggtattcgtgaa
gtcggtgaagcaacagcccaaaacctcgctaatcactttttaaccttagagaaaattact
caagccagtgttgatgcactaacagaagtgagcgatgtgggtgaaattgttgctaagcat
gtgcgcgggttctttagtgaagagcacaacatggctgttgttaatgcgttaatagagcag
ggaattcattggccagctttaaatgcaccaagcgctgagaagcaacctttagctggtctg
acgtatgttttaacaggcaccttaagtgagcttaatcgaaacgatgcgaaagcgcgtctg
caagctctcggtgcaaaagtatcggggagtgtgtcggctaaaacaaatgcccttattgca
ggtgaaaaagcaggctctaaactaacaaaagcacaagagttgggtattgaggtgcttact
gaagccgatttaattgctttattaagtgaacacaatggatag
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