Prevotella denticola: HMPREF9137_1136
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Entry
HMPREF9137_1136 CDS
T01459
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase OB-fold domain protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pdn
Prevotella denticola
Pathway
pdn03030
DNA replication
pdn03410
Base excision repair
pdn03420
Nucleotide excision repair
pdn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF9137_1136 (ligA)
03410 Base excision repair
HMPREF9137_1136 (ligA)
03420 Nucleotide excision repair
HMPREF9137_1136 (ligA)
03430 Mismatch repair
HMPREF9137_1136 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdn03032
]
HMPREF9137_1136 (ligA)
03400 DNA repair and recombination proteins [BR:
pdn03400
]
HMPREF9137_1136 (ligA)
Enzymes [BR:
pdn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HMPREF9137_1136 (ligA)
DNA replication proteins [BR:
pdn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HMPREF9137_1136 (ligA)
DNA repair and recombination proteins [BR:
pdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HMPREF9137_1136 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF9137_1136 (ligA)
MMR (mismatch excision repair)
DNA ligase
HMPREF9137_1136 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF9137_1136 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
DNA_ligase_ZBD
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
AEA20565
LinkDB
All DBs
Position
complement(1337617..1339671)
Genome browser
AA seq
684 aa
AA seq
DB search
MNKEIQSLVKQLNAASDAYYNGREELMTDYEWDAAFDRLKKLEEQTGIVLPDSPTQNVSA
DNVAGKKEKHEFPALSLAKTKKVEDLARWAEGKPIWLSWKLDGLTLVATYDNGRLTKVVT
RGDGHIGTNITHLSRAIEGILQTVPYRGHLVIRGEAVISYPDFEKFNMESEEEYANPRNL
ASGSLTLKDINEVKQRHLHWIPFTLVYTEEEIDSWGERMAWLERQGFHPVDRELISRPTA
GNIQAVIDSWSSRVTGQALNTRHPEADTQRFPYPVDGLVITYDDTAYAATGSVTGHHATR
AGYAFKWQDERAETELDYIEWSCAASTISPVAVFQPVELEGTTVKRASLCNISECERLGI
GGKGTKIAVIKANKIIPKVVSVVERMGIFHVPETCPVCRSATEVVESEASGTRTLHCTNT
HCPAKQLKKFGRFVSKEGVNIDGLSEQTVQKFINLGWICEYADFFHLNEHALQLRTMDGF
GDRSVSKLLAAVEKARSVEARRLLFALNIPLVGQDVCNRLLSAYPLKELIRTATESTDDD
VFSTIPGIGPEKSASFVRWMKDADNQPVLQHLLAELNVRQASSAPTGSSCQGLTFVITGD
VHHYKNRNELKAYIESQGGKVTGSVSKSTDFLINNDVKSTSGKNQKAKALSIPIISEEDF
IDHFAQGSASGLPAQRTEETLFQD
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaagaaatacaatcccttgtcaagcagctcaacgctgcctccgatgcttactac
aacggccgtgaagaactcatgaccgactacgagtgggacgctgccttcgaccggctcaag
aagctggaagaacagaccggcatcgtcctccccgactccccgacacagaatgtctcggcc
gacaatgtagccggaaagaaagagaaacatgagtttccggccctgtctctggcaaagacc
aaaaaggttgaagaccttgccagatgggcagaaggaaaacccatctggctctcctggaag
ctggacggcctgacacttgtcgccacttatgacaacggacggctgacaaaagtcgtcacc
cgaggcgacgggcacatcggcaccaacatcacccatctttccagagccatcgagggcatc
ttgcagaccgtcccctacagaggccatctcgtcatccgtggagaagccgtcatcagctac
cccgacttcgagaagttcaatatggagtcggaggaagagtatgccaatcctcgcaacctc
gcatcaggatcgctcacgctgaaagatatcaacgaggtcaagcaacgccacctgcactgg
attcctttcacccttgtctataccgaggaggaaatcgactcatggggcgaacggatggca
tggcttgaacgacagggattccatccggtagacagagaactcatctcacggccgacggcc
gggaacatacaagccgttatcgacagctggtcttcccgtgtcaccggacaagccctcaac
acccgtcatccggaagctgacacccaacgcttcccctaccccgtcgacggtctcgtcatc
acttatgacgacacggcctatgccgcaaccggttcggtcacagggcatcatgccacacgt
gccggctacgccttcaaatggcaggacgagcgggcggaaacggaactggactacatagaa
tggtcatgtgccgcatctacgatttcgccggtcgccgttttccagcctgtcgaactggag
gggacgaccgtcaagcgtgcctcgctctgcaacatctctgaatgcgaacgcctggggatc
ggcggcaagggcacgaaaatcgccgttatcaaggcaaacaaaatcataccgaaggttgtc
agtgtcgttgaacggatgggcatcttccatgtcccggagacctgtccggtatgccggtcg
gcgacagaagtcgtggagagtgaggccagcgggacacggacactgcactgcacaaacacc
cactgccctgccaaacagctcaagaagttcggccgtttcgtttccaaggagggggtgaac
atcgacggactgtccgaacagactgtccagaagttcatcaacctgggctggatttgtgag
tatgccgacttcttccatctcaacgaacatgctctgcagctgcgtaccatggacggtttc
ggagacaggagtgtcagcaaactcctggcagccgttgaaaaggcaaggagcgtggaagcc
cgtcggctgctcttcgcactcaacattccgctggtcggacaggatgtatgcaaccgtctg
ctttcagcctatccgctgaaagaactcatcaggactgctacggaaagtactgacgatgat
gtgttttcaaccattcccggtatcggaccggaaaagagtgcaagctttgtccggtggatg
aaagacgcagacaaccagcctgtgctgcaacacttgctggccgaactcaacgtcaggcaa
gcctcttctgcgccgacaggcagcagctgccagggactgacattcgtcattacgggcgat
gtccatcattacaagaaccgcaatgagctgaaagcctatatcgaaagtcagggcggtaaa
gttaccggttcggtttccaagtctactgactttctcattaacaatgatgtaaaaagcaca
tcgggcaaaaaccagaaagccaaggctctctccatccccatcatctctgaggaagatttc
atcgaccattttgcacagggttccgcctccggcttacccgcacagaggacagaagaaaca
ttattccaagactga
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integrated database retrieval system
