Penicillium digitatum: PDIP_82240
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Entry
PDIP_82240 CDS
T04849
Name
(RefSeq) U6 small nuclear ribonucleoprotein (Lsm3), putative
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
pdp
Penicillium digitatum
Pathway
pdp03018
RNA degradation
pdp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PDIP_82240
09123 Folding, sorting and degradation
03018 RNA degradation
PDIP_82240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_82240
03041 Spliceosome [BR:
pdp03041
]
PDIP_82240
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PDIP_82240
mRNA degradation factors
5'-3' decay
Lsm complex
PDIP_82240
Spliceosome [BR:
pdp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PDIP_82240
Complex C
U2 snRNP components
PDIP_82240
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq_1
Motif
Other DBs
NCBI-GeneID:
26236540
NCBI-ProteinID:
XP_014532381
UniProt:
K9F882
A0A7T6XFY8
LinkDB
All DBs
Position
Unknown
AA seq
96 aa
AA seq
DB search
MADSEDTGGPSVSEPLDLVRLSLDETVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIY
VVEEDENEEETLRTIKKQEEMLFVRGDSVVLISPQA
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atggctgactctgaggatactggcggtccatccgtctcggagcccctggatctcgttcgc
ctctccctcgatgagaccgtcttcgtgaagctgcgcggcgaccgtgagctcaagggccgt
cttcatgcctatgacagtcactgtaatctagtcctcggcgatgtggaggagacaatctac
gtggtggaagaggatgagaacgaagaggagactttgcggacaatcaagaaacaagaagag
atgctttttgtgcgaggagactccgtcgtcttgatctccccgcaggcatga
DBGET
integrated database retrieval system
