Pseudomonas sp. ATCC 13867: H681_15305
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Entry
H681_15305 CDS
T02524
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pdr
Pseudomonas sp. ATCC 13867
Pathway
pdr03030
DNA replication
pdr03410
Base excision repair
pdr03420
Nucleotide excision repair
pdr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H681_15305 (ligA)
03410 Base excision repair
H681_15305 (ligA)
03420 Nucleotide excision repair
H681_15305 (ligA)
03430 Mismatch repair
H681_15305 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdr03032
]
H681_15305 (ligA)
03400 DNA repair and recombination proteins [BR:
pdr03400
]
H681_15305 (ligA)
Enzymes [BR:
pdr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H681_15305 (ligA)
DNA replication proteins [BR:
pdr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H681_15305 (ligA)
DNA repair and recombination proteins [BR:
pdr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H681_15305 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H681_15305 (ligA)
MMR (mismatch excision repair)
DNA ligase
H681_15305 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H681_15305 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AGI24929
UniProt:
M4WYQ2
LinkDB
All DBs
Position
complement(3448790..3451183)
Genome browser
AA seq
797 aa
AA seq
DB search
MTDSQTAAERIAQLRSELDDHNYRYYVLDEPSVPDAEYDRLFRELKELEAEHPELITAES
PTQRVGGAAASAFGEVRHEVPMLSLGNAFEEQDLSDFDRRVREGLADQLPSSDLFGGGVD
VEYSCEPKLDGLAVSLLYENGLLTRGATRGDGTTGEDISTNVRTIRNVPLRLKGDGWPAV
LEVRGEVFMSRAGFDALNARQMEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGF
GRVEGGVLPDTQVGILEALKGWGIPISRELKLAKGVEGCRAYYEDIGSRRDSLAYEIDGV
VFKVNRIDFQRELGFRAREPRWAIAHKFPAREELTELLDVEFQVGRTGAVTPVARLKPVQ
VAGVTVSNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVMQVVTERRPADARPVEIPTQ
CPVCGSQVERTQLVKRSKGKESVSEGAIYRCVGRLFCQAQLKQAIIHFVSRRAMDIDGLG
DKIVEQLVDKGLVKSPADLYTLTFEQVIELEGFAEVSTRNLLAAIADSCKPTLARFVFAL
GIPDVGEETAKLLARSLGSLARIQKALPEVLTYLPDVGGEVAYEIHNFFDDEHNRSVIAE
LLDPEHGVQLQDEGEVSAEFAAVATLAGFIDKLNIPFIAATGAEKLADRTGSLDALVTLS
QDWLDLSTLKGVNEKARQSVREYFANAVRVERAKAVEAQLVEFGMHWRSERKVVEGLPLA
GQTWVLTGTLEAMSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLVKAQELGVAV
MDEEQLIRLLADHGIGA
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattcccagaccgctgccgaacgcatcgcccagttgcgcagcgagctcgacgac
cacaactaccgttactacgtgctcgacgaaccgagcgtgccggacgccgaatacgaccgc
ctgttccgcgagctgaaagaactggaagccgagcatcccgagctgatcaccgcggagtcg
ccgacccagcgcgttggcggtgcggccgcctcggccttcggtgaggtgcgccacgaagtg
ccgatgctcagcctgggcaacgccttcgaggagcaggacctgagcgacttcgaccgccgc
gtgcgcgaaggcctggccgaccagttgccgtcctccgacctgttcggcggcggcgtcgac
gtggaatacagctgcgagcccaagctcgacggcctggcggtcagcctgctgtacgagaat
ggcctgcttacccgtggcgccacccgtggcgatggcaccaccggcgaagacatcagcacc
aacgtgcgcaccatccgcaatgtgccgctgcgcctgaagggcgacggctggccggcagtg
ctggaagtgcgcggcgaggtgttcatgtccagggctggcttcgacgcgctcaacgcgcgg
cagatggaagccggcggcaagaccttcgccaacccgcgcaatgccgccgccggcagcctg
cgccagctggattcgaagatcaccgccagccgtccgctggaattctgctgctacggcttc
ggccgggtcgagggcggtgtgctgccggatacccaggttggtatcctcgaagcactcaag
ggctgggggatcccgatcagccgcgagctgaagctggccaagggcgtcgagggctgccgc
gcctattacgaagacatcggcagccgccgcgacagcctcgcctacgagatcgacggcgtg
gtgttcaaggtcaaccgcatcgacttccagcgcgaactgggcttccgcgcccgcgagccg
cgctgggccattgcccacaagttcccggcccgcgaggagctgaccgaactgcttgacgtg
gagttccaggtcggtcgcaccggcgcggtgacgcccgtggcgcgcctgaaaccggtgcag
gtggctggcgtgaccgtatccaacgccaccctgcacaacatggacgaggtcgcccgcctg
ggcctgatgatcggcgacaccgtgatcatccgccgcgccggcgacgtgatcccgcaggtg
atgcaggtggtgaccgagcgccgcccggcggacgcccgcccggtggaaatccccacccag
tgcccggtgtgtggctcgcaggtcgagcgcacccaactggtcaagcgcagcaagggcaag
gaatcggtcagcgagggcgccatctaccgctgcgtcggccggctgttctgccaggcgcag
ctcaagcaggcgatcatccacttcgtctcgcgccgcgcgatggacatcgacggcctcggc
gacaagatcgtcgagcaactggtggacaagggcctggtgaagtccccggccgacctctac
accctgacattcgagcaggtcatcgagctggaaggcttcgccgaagtttccacgcgcaac
ctgctcgccgctattgccgacagctgcaagcccaccctggcgcgcttcgtcttcgccctg
ggcattccggacgtgggcgaggagaccgccaagctgctggcgcgctccctgggctcgctg
gcgcgcatccagaaggcgttgccggaagtgctcacctatctgccggacgtcggcggcgag
gtggcctacgagatccataacttcttcgatgacgagcacaaccgcagcgtcatcgccgag
ctgctcgaccccgagcatggcgtgcagttgcaggacgagggcgaggtctccgccgagttc
gctgccgttgccacgctggcgggcttcatcgacaagctgaatatccccttcattgccgcc
accggcgccgagaagctggctgaccggaccggcagcctcgacgcgctcgtcaccctcagc
caggactggctggacctcagcaccctcaagggggtgaacgagaaggccaggcagtcggtg
cgcgagtatttcgccaacgctgtgcgtgtggagcgtgccaaggctgtcgaagcgcagctg
gtagagttcggcatgcactggcgcagcgagcgcaaggtggtcgaaggtctgccactggcc
ggccagacctgggtgctcaccggcacgctggaggccatgagtcgcgacgtcgccaaggaa
aagctcgaaagcctgggcgccaaggtagccggttcggtctcggccaagacccattgcgtc
gttgccggaccgggagcgggttcgaagttggtcaaggcccaggaacttggcgtcgccgtg
atggacgaagagcaactgatcaggctgctggccgatcacggtatcggcgcctga
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