Pseudomonas sp. ATCC 13867: H681_22700
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Entry
H681_22700 CDS
T02524
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pdr
Pseudomonas sp. ATCC 13867
Pathway
pdr03030
DNA replication
pdr03410
Base excision repair
pdr03420
Nucleotide excision repair
pdr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H681_22700 (ligB)
03410 Base excision repair
H681_22700 (ligB)
03420 Nucleotide excision repair
H681_22700 (ligB)
03430 Mismatch repair
H681_22700 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdr03032
]
H681_22700 (ligB)
03400 DNA repair and recombination proteins [BR:
pdr03400
]
H681_22700 (ligB)
Enzymes [BR:
pdr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H681_22700 (ligB)
DNA replication proteins [BR:
pdr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H681_22700 (ligB)
DNA repair and recombination proteins [BR:
pdr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H681_22700 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H681_22700 (ligB)
MMR (mismatch excision repair)
DNA ligase
H681_22700 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H681_22700 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
RNA_ligase
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AGI26407
LinkDB
All DBs
Position
5090435..5092090
Genome browser
AA seq
551 aa
AA seq
DB search
MPRLILALLLCPPLATYACTERTRDEIHALQAQLAQWDDAYHRQGTSPVADELYDQARER
LRQWQSCHPQIPTATDAPLASSAGDVRHPVAHTGLDKLPNAAAVRAWLTNRSDLWVQPKV
DGVAVTLVYQEGRLHQAISRGDGLTGQDWTANARQVPAIPRQLPGEHGRLVLQGELYWRL
PDHVQARQGGLGARGKVAGLMARKSLGNEGERIGLFVWELPDGPLDMPARQQRLRQLGFS
DSAERTEPVSGFAEIEAWRERWYKQPLPFASDGIVIRQGHRPPGRSWSAQAPGWAVAWKY
PYQQALAEVRRVEFKVGRSGRVTPVLHLAPVELDGRSIQRVSSGSLKRWRNLDVRPGDQV
AVTLAGLTIPRLDGVVWRSPTRADVAAPLDGQYSALTCWHATPDCRQQFLARLEWLSGKG
GLALSGVGPGTWRQLDEAGLLAGLLDWLLLTPGQLLAVPGLGERSAANLHRQFQLARQRP
FATWLRALGVPSADALPPDEDWAALAQRSAEQWQARPGIGTVRGVQLERFFHTTDVVQLQ
QQLHDVGIAGF
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgccacgcctgatcctcgccctactgctttgcccgccgcttgccacctacgcctgtacc
gaacggacacgcgacgagatacatgccctgcaagcccaactggcgcagtgggacgacgcc
taccaccggcaggggacctctcctgtcgcggacgagctgtacgaccaggcccgcgagcgg
ctgcggcagtggcagtcctgtcatccacaaatccccacagccacggatgcgcccctggcc
agcagcgccggcgacgtccgccacccggtcgcccacaccgggctcgacaagctccccaat
gccgccgccgtacgcgcctggctgacgaaccgcagcgacctctgggtgcagcccaaggtc
gatggcgttgcggtcaccctggtctaccaggaggggcggctgcaccaggcgatcagccgt
ggcgatggcctcacgggacaggactggacggccaatgcccggcaggtgcccgcgattccc
cggcagttacccggtgaacacggccggctggtgctgcagggcgagttgtactggcgcctg
ccggaccacgtgcaggcccgccagggcggcctgggggcgcgcggcaaggttgccgggctg
atggcgcgcaagtcgctcggcaacgagggcgagcggatcggcctgttcgtctgggagctt
cccgacggtcctctggacatgccggcgcgccagcagcgtctgcggcaattgggcttttcc
gacagcgccgagcggacggagcccgtcagcggattcgccgagatcgaagcctggcgcgaa
cgctggtacaagcagccgctgcccttcgccagcgacggcatcgtcattcgtcagggccac
cgccctccgggccgcagctggagcgcacaggcaccgggctgggcggtggcctggaagtac
ccgtatcaacaggcgttggccgaagttcgccgggtggagttcaaggtcggacgcagtggt
cgggtcacgccggtgctgcacctggcgccggtggaactggacggacgcagtatccagcgc
gtcagcagcggttccctgaagcgctggcgcaacctcgacgtccgtcccggcgaccaggtc
gccgtcaccctcgccggcctgaccatcccgcgcctggacggcgtggtctggcgctcgccc
acgcgcgccgacgttgccgcaccgctggacgggcagtacagcgccctgacctgctggcac
gcaacgcccgattgccggcagcagttccttgcccggctggagtggctgagcggcaaggga
gggctcgcactctccggagtgggaccggggacctggcggcagctcgacgaggccgggctg
ctggcggggctgctcgactggctactcctgacacccgggcaattgctcgcggtacccggc
ctgggcgagcgcagtgcggcgaacctgcaccgacagttccaactggcgcgccagcggccc
ttcgcgacctggctgcgcgccctcggcgtcccctccgccgacgccctgccgcccgacgaa
gactgggccgccctggcccaacgcagtgcggagcaatggcaggcccgccctgggatcggc
acggttcgcggcgtacaactggagcggttcttccacacaacggacgtcgtgcagctgcaa
cagcaactgcacgacgtcggcatcgccggtttctag
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