Prunus dulcis (almond): 117618457
Help
Entry
117618457 CDS
T07328
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pdul
Prunus dulcis (almond)
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pdul03036
]
117618457
03400 DNA repair and recombination proteins [BR:
pdul03400
]
117618457
Chromosome and associated proteins [BR:
pdul03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
117618457
DNA repair and recombination proteins [BR:
pdul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
117618457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
TACC_C
HATPase_c
Motif
Other DBs
NCBI-GeneID:
117618457
NCBI-ProteinID:
XP_034203913
LinkDB
All DBs
Position
2:25118051..25135980
Genome browser
AA seq
1715 aa
AA seq
DB search
MNFKNFKPHECHILKLHDGSHESAYTFENMWDLTPVTDILKELPEEYTFETALADLIDNS
LQAVWANDSRHKKLISVDVADDVISIFDTGPGMDGSDEHCIVKWGKMGASLHRSLREQAI
GGRPPYLTPFFGMFGYGGPLASMQLGRHALVSSKTKDSRKVYTLHLDREALLTGSNSNFQ
KKRRGSDSDSNWKTDGGMRDPLEDEISKTPHGSFTKVEIFKPKSKLDISQLQCKLKDIYF
PYIQCDEESKSGKTITPVNFEVNGVDLAEIEGGEIAITNVHSCNGPDFVLQLHFSCKQDS
MTKSPDSKAYIQANARLKCAYFPMVEGKENIEKILERLESDGCGTSENFETYSRVSIRRL
GRLLPDARWARLPFMEFKQKKGDKADLLKICCLRVKCFIETDAGFNPTPSKTNLAHHSPF
TTSLRNLGNQPLENEKDVRIKIYRDGNHLTISQLKKEYEDWILQMHERYDDEAHCGEDQP
VLVVSPANKKALRISSEVARVHKSLKRKGVTWKCGQKIKLLRGACAGVHNNNVYATIEYF
LLEGLEGDPGGGARIICRPLSLSVDKGCILKINDGDTSLDIRDSLSVPVSVIDSGKCLAV
ESNEWDNQLEKQRQKSPSTIDLLDVEECQELGVDGALPVDAPAGKVPPEVIVAVVRPASY
VSSCASKTLDQKYIARTNLKMFMEVEFRSDAEGLRTVRNISACAVPEPRKGIQGLYIFPL
KSKYPALFQTSGVYTFSFHLTESNCKHVEKRVLIKQAPIVEYKEIQFTCPNGKVLLLQDI
SHLHQVENLKAPVIGTPKVEFDEIQVQSSHGKVLPLQDSSSIQQVGNLIVPVMKAPKVEY
DESPIPCPNEKIFLLQDSSSLPHAQNLEASNVNKEKELEKDLHRSGMQIGDMEKNLDALN
KEKAVIEQDIYVVQASVERCNSDYCSMKAELKHRIESMSHTAASTLCNLLRVPSQELSND
FMGGVIGLVALLGSTGSSELSRILSEYLGEDQMLAVVCRSFAAAVALEKYEHNGEVDSRH
ALYAAAAKLGRSINGRFLVISLEDIRPYTGDFDGGDPQRKLALPYPILPSGNIPDGFLGY
AVNMVDLDEHHLHMTTAAGHVLRQTLFYFLFGELHVYKTRQDMLAARACIKHGAVSLDGG
ILRQTGAVSLGYGNPEICFPVLRSVAVMKKKIEIYKETMSAVIAAIEEFTKDHQKALKKF
HKKNKKWHELATVKERRLIKTTYDFDNGVLALARTGMASWASNGAPLAFMPTTLFILNNQ
GDQLELERGIQSGRAGEKRTRKMFQPNNQISDHTKSLSIQDSTALMQVDEKETSLVMKDG
MQNGGFAQAESIIYYTKKLQDDLQMMGMKIKQHEDNIKLLKSQRNKLDDSILDLQVILGK
YHTSTASKIENEDHSHCKSEEETTKKILQREKSAAGILWQLKTRHGTQAAHLTLTKDVLG
IVAMLGKVEDDNLSRLLSEYLGVDTMLSIVCKTYEGVKALETYDNEGCIKKSSGLHGLGA
SIGRTLEGRFQVICLDNLRPYAGEFVPDDPQRRLDLLKPRLPNGECPPGFLGYAVNMIHV
DSTSLFCVTASGHGLRETLFYNLFFRLQIYKTRADMVPALPCISDGAISLDGGMIRSTGV
FSLGNREDVDVRFPKLSVTSSLPETYLDSERQINELKWKKEKMQEDMKREQALLDNAKFN
FDRKKQDFLKFLADSSSYATQHQFQAAAQSRVTSR
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcaagaacttcaagccacatgagtgtcatattctaaagcttcatgatggttcc
catgagagtgcttatacttttgagaatatgtgggatctgacacctgttactgatatacta
aaagaattaccagaagagtacacatttgagactgctctggcagatttgattgataattcc
ctccaagctgtttgggcaaatgacagtagacataagaaacttataagtgtggatgttgct
gatgatgtgatttcaatttttgatactggccctgggatggatggaagcgatgaacattgt
atagtgaagtggggaaagatgggtgcttcacttcacagatctttaagagaacaggcaatc
gggggcagacctccatacttaacgccattttttggaatgtttggttatggaggaccttta
gcatctatgcaattagggaggcatgcactagtttcttccaagacaaaggactccaggaaa
gtgtatacattgcatcttgacagagaggctttactcacagggtcaaactctaattttcaa
aagaaaagaagagggtcagactctgattctaattggaagactgatggtggtatgagggat
cctttagaagatgaaattagcaaaactccacatggaagctttactaaggttgaaattttt
aaacctaaatcgaaattggacatatctcaactccaatgcaagctgaaggatatatatttc
ccatatattcagtgtgatgaagaatccaaatcagggaagaccataacgccagtaaacttt
gaggttaatggtgttgatttagccgagattgaaggtggggaaattgcaattacgaacgtt
cattcatgcaatggtcctgattttgttctacagcttcatttctcctgtaaacaagacagt
atgactaaatctccagattcgaaagcatatatacaagctaatgctcgcctcaagtgtgcc
tattttcctatggttgagggaaaagagaatattgagaaaattttggagaggttagaatct
gatggatgcggaacctcggaaaactttgaaacctatagtcgtgtctctattcggaggctt
ggtcgcctacttccagatgctcgctgggcccggcttccgttcatggaattcaagcaaaaa
aaaggagataaggcagacttgttgaaaatatgttgtttgagagttaaatgctttatcgag
actgacgctggtttcaatccaacaccatctaagaccaatctagcacaccatagtcctttt
accacttcactgaggaacttaggcaatcagcctcttgagaatgaaaaagatgtcagaatt
aaaatatatagagatggaaaccatttaactatttctcaactaaagaaggagtatgaggat
tggattcttcaaatgcatgagcgatatgatgatgaagctcactgtggtgaagatcaacct
gttcttgttgtcagtcctgcaaacaaaaaggcacttcgcatttcatccgaagttgcaagg
gttcataaatctctaaagaggaaaggagtgacatggaaatgcggccagaaaatcaaactt
ttaaggggagcatgtgctggggttcataacaacaatgtctatgccacaattgagtatttt
ttgcttgaaggtctcgaaggtgaccctggtgggggggctcgaattatttgcaggccatta
agtctgtcagttgacaagggatgcatccttaaaataaatgacggggataccagtttagat
attcgtgactccttatctgtacctgtcagtgtgattgattctgggaagtgtttagctgtt
gaaagtaatgaatgggataaccagctcgagaaacaacgccagaaatctccttctacaatt
gatctgctggatgtagaagaatgtcaggagttgggggttgatggggcattgcctgtggat
gccccagctggaaaagttcctccagaagtaattgtggctgttgttcgtcctgccagttat
gtctcttcttgtgcgtcaaagacccttgaccagaaatatattgctagaactaatttaaaa
atgtttatggaagttgagttcagaagtgatgctgagggtcttcgaactgttcgcaacatt
tcggcatgcgcagtacctgagccacgtaaaggaattcaagggttatatatctttccactt
aaatccaagtacccagctttatttcaaacttctggtgtctatacattttcattccatctg
actgagtcaaattgtaagcatgttgagaaaagggtattgatcaagcaagctccaatagtg
gagtataaagagatccaattcacttgtccaaatggaaaggtattgcttctccaagatata
tctcaccttcatcaagtagaaaacttaaaggctcccgtcattgggactccaaaagtggag
tttgatgagattcaggttcagtcttcgcatggcaaggttttgcctctccaggattcctct
tcaattcaacaagtaggaaacttaatagttcctgtaatgaaagctccaaaagtggagtat
gatgagagtccaatcccttgcccaaatgaaaagatttttcttctccaagattcctcttcc
cttccacacgcacaaaacttggaggcatcaaatgtgaataaggagaaggaattggagaaa
gaccttcaccgaagtggaatgcagattggagatatggaaaaaaatttggatgcacttaat
aaggagaaggcagtaattgagcaagatatatatgttgtgcaagcttctgttgaacgttgc
aattcagattactgttccatgaaagcagaattgaaacaccgcatagaaagcatgagccac
actgcagcttctacactctgcaaccttttaagagttccatcccaagagttgagcaatgat
ttcatgggaggcgtgatcggtttggtggctttacttggtagtactgggagcagtgagctt
agcaggatattatctgagtacttgggtgaagatcaaatgcttgctgttgtctgtagatcc
tttgcagctgctgttgctcttgagaagtatgaacacaatggggaagttgattctaggcat
gctctttatgcagcagcagctaagcttgggagatccataaatggccggtttcttgttata
agccttgaagatatacggccttacacaggtgattttgatggtggtgaccctcaaaggaag
ctggccttgccatatcctatcttgccaagtggaaatattccggatggtttcttggggtat
gcagttaatatggttgacctggatgagcatcatttacacatgacgacagctgcaggccat
gttcttcggcagacattgttttattttctttttggggagctccatgtttataaaactagg
caagacatgttagctgctcgtgcttgtatcaaacatggtgctgtatctctggatggtggg
attttaagacaaacaggggcagtttctctcggatatgggaatcctgaaatctgttttcct
gtcttgcggagtgttgcggtaatgaagaagaagattgaaatatacaaggaaacgatgagc
gcggtcattgctgccatagaggaatttaccaaagaccatcagaaagcgttaaagaaattc
cacaagaaaaacaagaagtggcacgagcttgcaacagtgaaggagcgtcggcttattaag
actacctatgatttcgacaatggggtcttggctctcgcacgcacgggcatggcatcatgg
gcttcgaacggcgcaccactagcctttatgccaacaactctattcattcttaataaccag
ggagaccagctggagttggagagaggcatacagagtgggagagcgggtgagaaaagaacc
agaaagatgttccaaccaaacaaccagatttcagatcatacaaagtcattatctattcaa
gattcaacagcattgatgcaagtggacgaaaaagaaactagtctagttatgaaggatggg
atgcaaaatggaggattcgcgcaagcagaatccatcatctactacactaagaaacttcaa
gatgatttacaaatgatggggatgaaaattaaacagcatgaagacaacataaaacttctg
aagtctcagagaaacaaattagatgactctattctcgatttgcaagttattctagggaag
tatcatacctcaactgcatctaaaatcgaaaatgaagaccattcccactgtaaaagtgag
gaggaaacaaccaaaaagattcttcagcgtgagaagtctgctgcaggcattttatggcag
ttgaaaactcgtcatggtactcaggctgcccatcttaccttgaccaaggatgtcctgggt
attgttgcaatgcttggcaaagtagaggatgataatcttagcaggcttttatcagaatac
ttaggagtcgatactatgttgtcaattgtctgtaagacttatgaaggtgtcaaagcttta
gaaacgtatgacaatgaaggctgcataaagaaaagttctggtcttcatgggcttggtgct
tctattggaaggacattagaaggccgttttcaggtcatttgtcttgataatttaagacca
tatgctggtgaatttgtacctgatgacccacagaggaggcttgatcttctgaagccaagg
ttacctaatggggaatgcccacccggttttcttggttatgcagtaaatatgatccatgtg
gatagcacaagcttattttgtgtcacagctagtgggcatggcctgagagagactctattt
tataacctcttctttcgcttgcaaatatataaaacaagggcagatatggttcctgcactt
ccttgtataagtgatggagccatttctttagatggcgggatgattaggtcaactggtgtg
ttttctcttggcaaccgggaagatgtagatgtgagatttcctaaactgtcagtgacatca
agcctacccgaaacctatcttgattctgaaagacaaatcaatgagttgaagtggaaaaaa
gaaaaaatgcaggaagatatgaagagagaacaagcattattggacaacgcgaagttcaat
tttgacagaaagaagcaagattttctgaaattcctggctgatagctcatcatatgcaact
cagcatcaatttcaggcagcagcgcaaagccgagtgacctcaaggtga
DBGET
integrated database retrieval system
