Prunus dulcis (almond): 117621280
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Entry
117621280 CDS
T07328
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117621280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdul03041
]
117621280
Spliceosome [BR:
pdul03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117621280
Complex C
U5 SnRNP specific factors
117621280
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
EF-G_D2
Septin
Ras
Motif
Other DBs
NCBI-GeneID:
117621280
NCBI-ProteinID:
XP_034207551
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All DBs
Position
3:complement(2460507..2466146)
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AA seq
988 aa
AA seq
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MDDSLYDEFGNYIGPEIESDQESDREDEDGELPDRQDDGAASDGDDAAAASNGWLAATSN
DVDMDNQVVLAEDKKYYPTAEEVFGEDVETLVMDEDAQPLEQPIIKPVRNVKFEVGVKDS
STYVSNQFLLGLMSNPSLVRNVALVGHLQHGKTIFMDMLVEQTHHMSTFDANSDKHMRYT
DTRIDEQERRISIKAVPMSLVLEDSKSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLI
VDAAEGMMVNTERAIRHAIQDRLPIVVVINKVDRLITELKLPPRDAYFKLRHTLEVINNH
ITAASSTAGNVQIIDPLAGNVCFASATAGWSFTLQSFAKLYIKLHGVNLDADKLASRLWG
DMYYHSGDRTFRRKPPVDGGERSFVEFVLEPLYKIYSQVIGEHKKSVEATLAEFGVTLSN
AAYKLNVRPLLRLACSSVFGSASGFTDMLVQHIPSPKDAATRKVDHIYTGPKDSLIYKAM
KNCEPDGPLMVNVTKLYPKSDCSVFDAFGRVYSGKIQTGQTVRVLGEGYSPEDEEDMTVK
EVTKLWLYQARDRIPIAEAPPGTWVLIEGVDASIMKTATLCDEYYDEDAYIFRPLQFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVV
SIDWSRKDIGNFFQTRYEWDVLAARSIWAFGPDKQGPNILLDDTLSTEVDKSLLNAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDARIAQEPLHRGSGQIIPTSRRVAYSSFLMATP
RLMEPVYYVEIQTPIDCISAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFET
DLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIILRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSINKFFDEAMMVELAQQAADLHQQMI
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagtctgtacgacgagttcgggaactatatagggcctgaaattgagtctgac
caagaaagtgatagagaggatgaagatggagagcttccagataggcaagacgatggggct
gcgtctgatggtgatgatgcagcagcggcttccaatgggtggctagctgctacctccaat
gatgttgatatggacaatcaggttgttcttgctgaggacaaaaagtattatcctacagcg
gaagaggtttttggggaagatgttgagactttggtcatggacgaagatgcacaaccccta
gaacagcccattatcaagcctgttaggaatgtcaagtttgaggttggcgtcaaggattct
tccacctacgtgtctaaccaattccttttgggtctcatgtcaaacccttctcttgttcgg
aatgttgctcttgtggggcacttgcagcacggaaagacgatattcatggatatgttggtg
gagcagacacaccatatgtccactttcgatgcaaatagtgataagcacatgaggtacacg
gatacaaggattgatgagcaagagagaaggatatctattaaagcagttcctatgtccctt
gtacttgaggatagcaagtctaaatcgtacctgtgcaacattatggatacacctggtcat
gtcaatttctctgatgaaatgactgctgccctcaggcttgctgatggtgctgtcttaatt
gtggacgccgctgaaggaatgatggtaaataccgagagggctatacgccatgcaatccaa
gatcgcctaccaattgtggttgtaatcaacaaggttgacaggttgataacagaacttaaa
ttgcccccaagggatgcttacttcaagctaaggcatactttggaagtcattaataaccac
ataactgctgcctcttcaactgctggcaatgtgcaaattattgatcctttggcagggaat
gtttgctttgcaagtgctaccgcaggatggtcattcacgttgcaatcatttgcaaagcta
tatattaaacttcatggtgtcaaccttgatgcagataagcttgcttctcgtctctgggga
gatatgtactatcatagtggtgacaggactttcaggagaaaaccccctgttgatggagga
gaaagatcatttgtcgagtttgtgcttgaacccctgtataaaatttatagccaggtaatt
ggagaacataaaaagagcgtggaggcaactcttgcagaatttggtgtcacccttagcaat
gcagcttataaattgaatgttagacctctgctgaggttggcttgtagctcagttttcgga
tctgcctcaggcttcactgatatgctggttcaacatattccttcccctaaagatgccgca
actaggaaagttgaccacatatatactggaccaaaagactctttgatttacaaggccatg
aaaaattgtgaacctgatggtcctttaatggtcaatgtaaccaaattgtatcccaagtcc
gactgtagtgtgtttgatgcatttggtagagtttatagtggcaagattcagacagggcag
actgtacgtgtattgggagaaggctattcaccagaggatgaggaagacatgacagtcaaa
gaggtgacaaaattatggctttatcaagctcgagataggatacccatagccgaggctcct
cctggtacttgggttcttattgaaggtgtagatgcttctattatgaaaactgccaccctc
tgtgatgagtattatgatgaggatgcttacatattccgtcctcttcagttcaatacgctg
ccagttgtgaagacggcaactgagcctctaaatccaagtgagttgccaaaaatggtggag
ggtcttagaaagatcagcaagagttatccacttgcaatcactaaagttgaggagtctggg
gagcacacaatcttaggtacgggagaactgtatttggattcaataatgaaggaccttaga
gagctctattctgaagtagaagttaaggttgcagatcctgttgtttcattttgtgaaaca
gtggtggagtcctcatcaatgaaatgttttgctgaaacacccaacaagaagaataaaata
actatgattgcagagccattggagagaggacttgcggaggacattgagaatggtgttgta
agcattgattggtctcggaaggatataggcaatttcttccagactagatatgagtgggat
gttctcgctgcacggtccatatgggcatttggccctgataagcagggacctaacattctg
ttagacgatacactttcaactgaagttgacaaaagcttgctgaatgcagtgaaggattca
attgttcaagggtttcagtggggtgctcgagaaggacccctttgtgatgaacccatcaga
aatgtgaagttcaaaatagtggatgcaaggattgcacaagagccattgcatcgtggatct
ggtcagatcattcccacatctcgtcgtgtggcctattcatcattcttaatggcaacccca
cggcttatggagccagtatattatgtggagatacaaacaccaatcgactgtatttctgca
atctacactgttctatctcgcaggcgtggacatgttacggcagatgttcctcaacctggg
acccctgcttatattgttaaggcatttttaccagttatcgaatctttcgggtttgaaaca
gacttgaggtaccacacccaaggacaggctttttgcctatcagtctttgatcattgggct
atagttccgggggatcctcttgacaagagtatcattctgcgacccctggaacctgcccca
attcaacacctagcccgtgagttcatggtgaaaaccaggcgcagaaagggaatgagtgag
gatgtgagcatcaacaaatttttcgacgaggccatgatggtggaactggctcagcaagca
gcggatcttcatcagcaaatgatatga
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