KEGG   Prunus dulcis (almond): 117627800
Entry
117627800         CDS       T07328                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
pdul  Prunus dulcis (almond)
Pathway
pdul03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pdul00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    117627800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pdul03021]
    117627800
Enzymes [BR:pdul01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     117627800
Transcription machinery [BR:pdul03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     117627800
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 117627800
NCBI-ProteinID: XP_034215936
LinkDB
Position
5:complement(8804705..8818124)
AA seq 1491 aa
MVIYVFFFLSTCLCLTLLAIYAGSQLFFCFFVIIKLIKSPMDNELYEEEGVPSGLITGIH
LNVSTQEDIENISVKQIDAVTEVTDPKLGLPNPSFQCSTCGAEKLKCCEGHFGDIKFPCT
ILHPYYLSEVAQILNKICPGCKSIRQNLRAKGAGSVIGHRKLKGCKYCIGSSINYPRMKF
KVSTRELFKRSAIIAEANGILPADYWDFIPKDAQQDESCMKPNKRVLSHAQVHYLLKDVD
TKFIEKIVPKTNSLSMGSFLVTPNCHRVTEVMHSFSNGQRLMFDERTRAYRKLVDFKGVA
NELGSRVLDCLKISKLNSEKPSKDFISAQQKNIKDDPSKTSGLRWIKDVVLGKRSDHCFR
TVVVGDPNIKLSEIGIPCQIAERLQISENLNRWNIEKLDASCNLRLMVKGEMHVRRKGSL
VWVRQTDELQMGDTIYRPLSDGDIVLINRPPSIHQHSLIALSVKILPITSVVSINPLCCS
PFRGDFDGDCLHGYIPQSNDARVELRELVALDKQLINGQSGRNLLSLSQDSLTAAHLIME
DGTLLNLLEMQQLEMFCWDVLPSPAVIKAPSLNSHAWTGKQVFSMLLPSDFDYDFASDGI
YIKNGELLSSEGSSWLRDTGGNLFQSLVNHFQGQVLDFLFAAQEVLCEWLSMRGLSVSLA
DLYLASDSGSRNNLMEEILCGLQEAEQACIFKQLLVDNCQDFLMGCAEENRSPLTFDAEY
FCHEKQKSAALSQVVHDAFKHIFRDIQSLAHKYAGKDNSLLTMLKAGSKGNLQKLVQHSM
CLGLQHSLIPLSFRIPNQLSCAAWNNQKACSLIQKVEGTYECVESYIPSAVVKSSFLTGL
NPLECFVHSVTSRDSSFSGNADLPGTLTRKLMFLMRDLYTAYDGTVRNAYGNQLVQFSYD
IDMDKSDSTSTSHAKSTTACDGIGGQPVGSLSACALSEAAYSALDQPVSLLETSPLLNLK
NILECGSKKSSAKQTMSLFLSEKLGRRRHGFEYGALEVKNHLVGLTFSNIVSTVMIIFSS
QSNSQKRFSPWVTHFHICKEIVRKRRLKVHSVVDSLYARCNSARPELKIVLRSLLITSKG
CSAAQTCNGDDDKFCITVTMPENSKNSSEQLDIARDLVIPFLLGTVVKGFLEVKKVDILW
NDHPRESKKIHGSSGELYLRVSMSGKTGRRRLWSMLMDNCLQIMDLIDWSRSHPDNVHDY
CIAYGIDAGWKYFLNNLETAANDIGKDILPQHLILVADCLSATGEFVGLNAKGIAQQKGH
TSVSSPFVQACFSSPGACFIKAAKGGVVDELHGSVEALAWGNTPPSGTGRQFDILYSKEG
LNLSKPLNPYDLLGSQISSSRENAFETSKAWNNTLDKCDVTSIGLEKSESVFKSVIRKYL
TINDIQKWTQTLKHILRKYDINESLTEGDKSILKMALHFHPHKVDKMGSGVQDIKVGQHP
KHENARCFMLVRIDRTEEDFSYHKCVLGALEIVAPERAKSYRSKWMNHLPE
NT seq 4476 nt   +upstreamnt  +downstreamnt
atggttatttacgttttctttttcttatctacttgtctttgtttaacgctcttggctatc
tatgcaggttcacaactttttttttgtttttttgtaattataaagttaatcaagagcccc
atggacaatgaattgtatgaagaagaaggagtgccatctggtctcataactggaatacat
ctaaatgtttcaactcaggaagatatagagaatatatctgttaaacaaattgatgcagtc
actgaggtcactgatcctaagttgggacttccgaatccatcttttcagtgctctacttgt
ggtgctgaaaaattaaaatgctgtgaaggtcattttggggatatcaagtttccatgcacg
attctccatccctattatctttcggaagttgcccaaattttaaacaagatttgcccagga
tgtaaatctatcaggcaaaatctaagggccaagggtgctggttctgtaattggtcatagg
aagctcaagggttgcaaatattgtattggaagttcgataaactatccaagaatgaaattc
aaagtttctacgagagagctctttaaaagaagtgcaataattgcggaagcaaatggaata
ttacctgctgactattgggactttattccaaaagatgcacagcaagatgaaagttgcatg
aaaccaaacaaaagagttctatctcacgctcaggttcattatttgttgaaggatgttgat
acaaaattcattgaaaagattgtaccaaagacaaactcactttctatgggttctttcctt
gtaactccaaattgtcatcgcgtgacagaagttatgcattctttttctaatgggcagcgg
ttgatgtttgatgaacggaccagggcttatagaaagcttgttgatttcaaaggtgtagct
aatgagttgggttctcgtgttttggactgcctgaaaatttccaagctaaactcagaaaaa
ccaagcaaagattttatttctgctcagcaaaaaaatattaaagacgatccttcaaaaaca
tctggcttgagatggatcaaagatgttgttctagggaagcgaagtgaccactgtttccgc
acagttgttgttggtgatccaaacatcaagctcagtgaaattggcataccatgtcaaatt
gcagagaggttgcagatttctgagaatctgaacagatggaacatcgaaaagttggatgcc
tcctgcaatctacgccttatggtgaaaggcgagatgcatgtgcgtagaaaaggtagtctg
gtttgggtacgccaaacagatgaattgcagatgggagatactatttaccggcctttgagt
gatggagatattgtgctcataaataggcctccatcaatacatcaacactccctgatagct
ttatctgtcaagatccttccaataacttctgttgtatcaataaacccactttgttgctct
ccttttcgtggtgattttgatggtgattgccttcatggttatattcctcaatcaaatgat
gccagagttgagcttcgagagcttgttgctttagataagcaattgattaatgggcagagt
ggtaggaacctgctctcacttagtcaggatagcttaactgcggcccatttgatcatggag
gatggcactctcttgaatctacttgaaatgcaacagttggaaatgttctgctgggatgta
ctgccatcaccagcagttattaaagcaccctcacttaatagccatgcttggactggaaag
caagtattcagcatgctcctaccttcagattttgattacgattttgcttcagatggtatt
tatattaaaaatggggagctgttatcttctgaaggttcttcttggttgcgagacacaggc
ggcaatctttttcagagccttgttaatcatttccagggtcaggtacttgacttcttgttt
gctgctcaggaggttctttgtgagtggttgtcgatgaggggcttgagtgtctctctcgcg
gacctgtacctcgcttctgactcaggttcaaggaataatttgatggaggaaattttatgt
gggttgcaagaagcggaacaggcgtgtatatttaaacagttgttggtggataattgtcag
gactttctcatgggatgtgcagaagagaatcgaagtcctctgacttttgatgcagaatac
ttttgtcatgagaagcagaaatctgctgcccttagtcaggttgttcatgatgctttcaag
cacatttttcgggatattcaaagtttagcacacaaatatgctggtaaggacaactctttg
ctgactatgcttaaggctggaagcaagggtaatttgcagaaattagttcagcacagtatg
tgccttggtttgcaacactcactgattccattatcattcagaattcccaaccagctctca
tgtgctgcatggaataatcaaaaggcatgcagtttaattcagaaggttgagggaacttat
gaatgtgttgagtcctacatcccatctgccgtggttaaaagctctttcttgacaggctta
aatccgttagaatgttttgttcattccgtaacaagtcgagatagttcttttagtggtaat
gctgatcttccagggactttgactcgaaagctaatgtttttaatgcgggatttgtacact
gcttatgatggaacggtgagaaatgcatatgggaaccagcttgttcagttctcctatgat
attgatatggacaaatcagatagcaccagtacctcacatgccaagagtactactgcttgt
gatggtataggtggccaacctgtcggctcattgtctgcttgtgccctatctgaagctgca
tacagtgctttagatcaaccagttagtcttcttgaaacttctccactgctaaatctgaag
aacatcttggaatgtggttcaaagaaaagtagtgctaagcaaactatgtctctattttta
tccgagaagcttggaagacggaggcatggttttgagtatggagccttagaagttaagaat
catttggtgggactgacattttccaacattgtttctactgtcatgataatcttctcctca
caaagtaatagccaaaagcgtttcagcccatgggttacccactttcatatatgcaaggaa
attgtgaggaaaaggaggctgaaggtgcattccgttgttgattccctttatgcaaggtgc
aattcagccagacctgaattaaaaattgttcttcgcagtttgctgattacaagcaagggt
tgttctgcagctcagacatgcaatggagatgacgataaattttgcatcactgtcactatg
cctgaaaactccaaaaattcttctgaacagctggatatagctcgagacttggtgatacct
ttccttcttggaacagttgttaaaggattcctggaggtgaaaaaggtggatattttatgg
aatgaccaccccagggaatcaaaaaagattcatggttcttctggtgaactctacttaagg
gtttctatgtcgggaaagactggcaggagaaggctttggagtatgcttatggataactgt
ctccagattatggatttgattgattggtcacgaagtcatccagataacgtccatgattat
tgcatagcgtatggaatagatgctgggtggaaatattttctcaataatttagagaccgca
gccaatgacattggaaaggacatacttcctcaacatttgattcttgtggctgattgtttg
tcagcaaccggcgagtttgttgggttgaatgccaaaggcattgcccaacagaaaggacac
acatctgtatcctcgccatttgtacaagcgtgtttttcaagtcctggtgcttgctttata
aaagctgccaagggtggagttgtggatgaacttcatgggagtgtggaagcattggcatgg
ggaaatactcctccttcagggactggcagacagttcgacatattatattctaaggaggga
ctcaatctatcaaagccattgaatccttacgacctactgggcagccaaattagttccagt
agagagaatgcatttgaaacgtctaaagcttggaacaatacactagacaaatgtgatgta
acatctattgggcttgagaagtcagagagcgtcttcaaatcagtcataagaaagtatttg
actatcaacgatattcagaagtggactcagacattgaagcatattttgcgcaagtatgac
atcaatgaaagtttaactgaaggggacaagtcaatcttgaagatggcattacattttcat
cctcacaaagttgataagatgggaagtggagttcaagacataaaggttgggcaacacccg
aagcatgagaatgcacgttgctttatgttggtacgaatagacaggacagaagaagatttt
tcgtaccacaagtgtgtactgggtgctctcgagattgtagctcctgaaagggcgaaaagc
taccggtcaaaatggatgaaccatttacccgagtaa

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