Prunus dulcis (almond): 117632783
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Entry
117632783 CDS
T07328
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117632783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117632783
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117632783
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
AAA_25
AAA
Arf
AAA_23
ORC-CDC6-like
AAA_30
nSTAND3
AAA_7
Zeta_toxin
TsaE
AAA_28
Motif
Other DBs
NCBI-GeneID:
117632783
NCBI-ProteinID:
XP_034222245
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Position
6:complement(26524738..26526245)
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AA seq
322 aa
AA seq
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MGVKLNSGPTIEINGLKFTYPGINGHPPPGSKPLIEDFNLTLNAGDRCLLVGSNGAGKTT
ILKILGGKHMVEPHMVRVLGRSAFHDTALTGSGDLSYLGGEWRRDVAFAGFDVPIQMDVS
ADKLINGVSGVDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPYKVLLLDEI
TVDLDVLARADLLKFLKKECEERGATIIYATHIFDGLEDWPSHIAYVANGKLQLALPMDR
VKEMYKLSLMRTVESWLRKERDEERKRRNERKAKGLPEFEQQNEGSSGDVRAVNNGWAAG
RLNSTIAGEENFVFSSNRVLRQ
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgaagctcaactccggaccgacgatcgagatcaacggcctcaaattcacctac
ccaggaatcaacggccatcctccaccgggctccaagcctctgatcgaggacttcaacctc
accctcaatgccggcgatcggtgcctcctcgtcggatccaacggcgccggcaaaaccacg
atcttgaagatcttgggaggcaagcacatggtcgagccccacatggttcgcgtgctcgga
aggtcggcgtttcacgacaccgccttgaccggctccggcgacctctcctatctcggcgga
gagtggaggcgagatgtggcttttgccgggtttgatgtcccgatacagatggacgtttcg
gccgataagttgatcaatggggtatcgggggtcgacccacaaaggagagcagagctaata
aaggttctggatattgatctttcatggaggctgcacaaggtctccgatggtcagagaaga
cgagtgcagatctgcatgggcttgctcaagccatacaaggttcttctgcttgatgagatt
actgtggaccttgatgtgctagcaagagctgaccttctcaagtttttgaaaaaggaatgt
gaagagagaggcgccaccatcatttatgctacacatatatttgatgggttggaggattgg
ccttcacatattgcttatgtagctaatggaaagttgcagctagctctgcccatggataga
gttaaggagatgtacaagttgtcactcatgagaacagttgagagttggctgaggaaggaa
cgtgatgaagagaggaagagaagaaacgaaagaaaggcaaagggccttcctgagtttgag
caacaaaatgagggaagcagcggtgatgttcgtgcagtgaataatggctgggcagccgga
cgcttgaattccaccattgctggagaagagaactttgtcttcagttcaaatagagttcta
aggcaatag
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