Pseudomonas donghuensis: BV82_0973
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Entry
BV82_0973 CDS
T07361
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pdw
Pseudomonas donghuensis
Pathway
pdw03030
DNA replication
pdw03410
Base excision repair
pdw03420
Nucleotide excision repair
pdw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BV82_0973 (ligA)
03410 Base excision repair
BV82_0973 (ligA)
03420 Nucleotide excision repair
BV82_0973 (ligA)
03430 Mismatch repair
BV82_0973 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdw03032
]
BV82_0973 (ligA)
03400 DNA repair and recombination proteins [BR:
pdw03400
]
BV82_0973 (ligA)
Enzymes [BR:
pdw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BV82_0973 (ligA)
DNA replication proteins [BR:
pdw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BV82_0973 (ligA)
DNA repair and recombination proteins [BR:
pdw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BV82_0973 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BV82_0973 (ligA)
MMR (mismatch excision repair)
DNA ligase
BV82_0973 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BV82_0973 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
KDO01106
UniProt:
A0AAP0XBN3
LinkDB
All DBs
Position
1884091..1886445
Genome browser
AA seq
784 aa
AA seq
DB search
MTAESRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPGLVTADSPTQR
VGGSALSAFSQVRHEVPMLSLGNAFEENDLREFDRRVVEGLDLPAGDLLGDGAAVDYSCE
PKLDGLAVSLLYRDGQLVQGATRGDGTTGEDISVNVRTVRNIPLKLQGEGWPAVLEVRGE
VYMSKAGFERLNQAQIDAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSAP
VADTHIGTLEQLKAWGMPISRELRHAAGVAECLEYYRDIGARRNELPYEIDGVVFKVNSL
ASQRELGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVS
NATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVMQVVTERRPEGARPVHIPTECPVCGSQ
VERTQLVKRSKGKETVSEGAVYRCVGRLACAAQLKQAIIHYVSRRAMDIEGLGEKSVEQL
VDEGLIRSPADLYQLTFEQIVDLEGFAELSSKNLLAAIEASKKPGLARFIYALGIPDVGE
ETAKVLARSLGSLQRVMAALPQVLTYLPDIGLEVAHEIHSFFEDEHNRTVIAQLLERGLQ
LQDEGELGAEFAASTTLAGLIAKLDIPSVGPTGAEKLVAKLDSLEKIIAADGIDLRQALA
AKPAEAVRAFFQVAENAALALAIEAQLRDFGMHWSSEKKVAEGLPLAGQTWVLTGSLERM
SRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEDAFVGFLAGH
GIAV
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgaatcccgaatccttgaactgcgcgccgagctcgaccagcacaactaccgc
tactacgtgctcgatgagccgagtgtgcccgacgctgagtacgatcgcctgttcaatgaa
ctcaaagccctggaagccgaacatccagggctggtgaccgctgactcgccgacccagcgt
gttggcggctcggcgttgtcggcattcagccaggtgcgccacgaagtgccgatgctcagc
ctgggcaatgcctttgaagaaaatgacttgcgcgagtttgaccgtcgtgtggttgaaggt
ctggacctgccggctggcgacctgctgggtgacggcgccgcagtcgactacagttgcgag
cccaagctcgacggcctggcggtcagcctgctgtaccgtgatgggcaactggtgcagggc
gcaacccgtggcgacggcaccacgggggaagacatcagcgtcaatgtgcgcactgtgcgc
aacatcccgctcaagctgcagggcgaaggctggccggcagtgctggaagtgcgtggtgaa
gtgtacatgtccaaggccgggttcgagcgcctgaaccaggcgcagatcgacgcgggcggc
aagaccttcgccaacccgcgcaatgccgccgccggcagcctgcgccagcttgactcgaag
atcaccgccagccgcccgctggaattctgctgctatggcgtcggccaggtatcggcgccg
gttgccgacacccacatcggcaccctggagcagctcaaggcctggggcatgccgatcagc
cgcgagctgcgccatgccgctggcgtggccgagtgcctggagtactaccgcgacatcggc
gcgcggcgcaacgagctgccttacgagatcgacggcgtagtgttcaaggtcaacagcctg
gcttcccagcgcgagttgggcttccgcgcccgtgaaccgcgctgggcgattgcccacaag
ttcccggccatggaggagctgaccgaagtgctggacgtcgagttccaggtcggccgcacc
ggcgcggtaacccccgtggcccggctcaagccggtcaaggtggcgggtgtgacggtgtcc
aatgccaccctgcacaacatggacgaagtcgcccgcctgggcctgatgatcggcgacacg
gtgatcattcgccgcgccggtgacgtcatcccgcaagtcatgcaggtggtcaccgagcgt
cgcccggaaggtgcccgccccgtgcacatccccaccgaatgcccggtgtgcggctcgcag
gtcgagcgcacccagctggtcaagcgcagcaagggcaaggagaccgtcagcgaaggcgct
gtgtaccgctgcgtcggccgtctggcctgcgccgcccagctcaagcaggcgatcattcac
tatgtatcgcgccgcgccatggatatcgaaggcctgggcgagaagagcgtcgagcaactg
gtggacgaaggcttgatccgttcgccagctgatctgtaccagctgacctttgagcagatc
gtcgaccttgaaggctttgccgagctgtcgagcaagaacctgttggcggccatcgaagcc
agcaaaaaaccgggcctggcgcgcttcatctacgccctcggcattccggatgtgggcgag
gagacggccaaggtactggctcgctccctgggttcgttgcagcgggtcatggcggcgttg
ccgcaggtgctgacttacctgccggacatcggcctggaggtcgcccacgagatccacagc
ttcttcgaagacgagcacaaccgcacagtgatcgcgcagttgctcgaacgcggcttgcag
ttgcaggacgaaggggagctgggcgccgagttcgccgccagcactaccctggccgggttg
attgccaagctggatattccgtcggtcgggcccaccggcgcggaaaaactggtggccaag
ctcgacagcctggagaagatcatcgccgctgacggcatcgacctgcgccaggccttggcg
gccaagccggccgaagcggtacgggccttcttccaggtcgcggaaaacgccgccctggcc
ctggccatcgaagcgcagctgcgcgacttcggtatgcactggtcgagcgagaagaaagtc
gccgaaggcttgcccctggccggccagacctgggtgctgaccggctcgctggaacgcatg
agccgcgatgtggccaaggacaagctggaaagcctcggggccaaggtcgccggttccgtc
tcggccaagacccactgcgtggtcgccggccccggcgccggttccaagctggccaaggcc
agcgagttgggcctgaaggtgctggatgaagatgccttcgtcggcttcctggccggtcac
ggcatcgcggtataa
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