Pseudomonas donghuensis: BV82_2699
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Entry
BV82_2699 CDS
T07361
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pdw
Pseudomonas donghuensis
Pathway
pdw03030
DNA replication
pdw03410
Base excision repair
pdw03420
Nucleotide excision repair
pdw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BV82_2699 (ligB)
03410 Base excision repair
BV82_2699 (ligB)
03420 Nucleotide excision repair
BV82_2699 (ligB)
03430 Mismatch repair
BV82_2699 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdw03032
]
BV82_2699 (ligB)
03400 DNA repair and recombination proteins [BR:
pdw03400
]
BV82_2699 (ligB)
Enzymes [BR:
pdw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BV82_2699 (ligB)
DNA replication proteins [BR:
pdw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BV82_2699 (ligB)
DNA repair and recombination proteins [BR:
pdw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BV82_2699 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BV82_2699 (ligB)
MMR (mismatch excision repair)
DNA ligase
BV82_2699 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BV82_2699 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
RNA_ligase
HHH_5
Motif
Other DBs
NCBI-ProteinID:
KDN99489
UniProt:
A0AAP0SFK6
LinkDB
All DBs
Position
complement(602120..603808)
Genome browser
AA seq
562 aa
AA seq
DB search
MLAMLHTSLLSLLLFFWLLPAHAQTCPDWPTVQARAEIRQLQLTLADWDDHYHRQGVSLV
ADELYDQSRTRLSHLQSCFPLPAKAPGNPLKTAVGPLRHPIAHTGLGKLADEAAVKAWLH
GKQDLWIQPKVDGVAATLVYRGGKLVQLISRGDGVHGHDWSRHIPALGGLNQQLPEPLDL
VLQGELFWRLDGHVQANAGSLNARGNVAGLLARKRISAEQGAVVGLFVWAWPQGPADQRA
RLKGLSTLGFEHSERYSEPLSTFAEAARWREYWYRSPLPFASDGVVLRQGNRPDGTRWQA
RDPYWITAWKYPFAQALAEVRGVQFNIGRTGRITPVLQIKPVQLDDRQIRQVSLGSFQRW
QQLDIRPGDQVAISLAGLTIPRLDEVVLRSVQRMNIAVPDPAHYHLLSCWQASDGCRGQF
IARLNWLSGKQGLNMPGLGPGTWEKLIDSGHVRGLGDWLDLQDQDLQSVPGLGERSRQQL
LHAFDQARQQPFARWLSALGVPAATPLAADTTWVDLLQRDAGQWLSEPGVGQGRSAQLLA
FFSSPEVQIVAEQLRRHTIEGF
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgctcgccatgctgcacacgtccctgctgtcccttctgctcttcttctggctgctcccg
gcacacgcgcagacttgccccgactggccgacggtccaggcccgggctgaaatccgccag
ctccagctgacgcttgccgactgggacgatcactatcaccgtcagggtgtctcactggtc
gccgacgaactctacgaccagagccgtacgcgcctgagccatctgcaaagctgcttcccc
ttgccggccaaggcgccgggcaacccgctgaaaaccgccgtcggccccctgcgccacccg
attgcccataccggcctgggcaagctggccgacgaggcggcagtcaaagcctggctgcat
ggcaagcaagacctgtggattcagcccaaggtcgacggcgtggctgccaccctggtctat
cgcggcggcaagctggtgcaactgatcagccgtggcgacggcgttcatggtcacgactgg
agccgccacatcccggccctgggcgggctcaaccagcagttgcccgagccgctcgacctt
gtgcttcagggcgaactgttctggcgcctggacggccatgtgcaagccaatgccggcagc
ctcaacgcccgcggcaatgtcgccggcttgctggcacgcaaacgcatcagcgccgaacag
ggcgcggtggtcgggttgttcgtctgggcctggccgcagggaccggccgatcagcgcgcg
cggctcaagggtttgagcacattgggctttgaacatagcgagcgttacagcgaacccttg
agcacctttgccgaggctgccaggtggcgtgagtattggtaccgcagcccgctgccgttc
gccagcgacggcgttgtgctgcgtcagggcaatcgtccggacggcacgcgctggcaagca
cgcgacccttactggataaccgcctggaagtacccttttgcccaggccctggctgaagtc
cgtggtgtgcagttcaacattggccgcaccgggcgcatcacgccggtgctgcagatcaag
ccggtgcaactggatgaccggcagatccgtcaggtcagcctcggctcctttcagcgctgg
cagcagctggacatccgccccggtgatcaagtggccatcagcctggccgggctgaccatc
ccgcgcctggacgaggtcgtactccgcagcgttcaacgtatgaacatcgcggtcccggac
cctgcccactaccacctgctcagttgctggcaagcgagcgatggctgccgcggccagttc
atcgcccggctcaactggctcagcggcaagcaaggcctgaacatgccagggctgggcccg
ggtacctgggagaaactgatcgacagcggtcatgttcgcggcctgggcgactggctggac
ctccaggaccaagacctgcaatcggtacccggactaggtgagcgcagccgccagcagttg
ctgcacgccttcgaccaggctcgccagcaacccttcgcgcgctggctcagcgctttgggc
gttccagccgcaacgcctttggcagcggataccacttgggtagacctgctccagcgcgac
gccgggcaatggctgagcgaaccgggtgttggccaaggtcgcagtgctcaattgctggca
tttttcagctcacccgaggtgcagatagtggccgaacaattgcgcagacacacaatcgag
ggtttctaa
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