Primulina eburnea: 140842074
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Entry
140842074 CDS
T11060
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
pebu Primulina eburnea
Pathway
pebu04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
140842074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140842074
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
140842074
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
140842074
NCBI-ProteinID:
XP_073065994
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All DBs
Position
9:complement(35099135..35147145)
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AA seq
984 aa
AA seq
DB search
MGVPSFYRWLADRYPLCIVDVVEEEPGKDNNGVQLPLDVSTPNPNGIEFDNLYLDMNGII
HPCFHPEGKPAPTTYSDVFKSIFDYIDHLVSLVRPRKLLYMAIDGVAPRAKMNQQRTRRF
RAAKDAAAAEAEEERLRKEFELEEENLLPKEKTETSDSNVITPGTHFMAVLSVALQYYVQ
CRLNHGPGWHFMKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCFVGTDADLIML
SLATHEVHFSILREVINPPGRQEKCFLCGQTGHLAAECHGGTNGEAQDVNGNFLKDVPIH
KKKYQFLNIWVLREYLGYEMDIPNPPFKIEFDRLVDDFVFLCFFVGNDFLPHMPTLEIRE
GAINLLIFVYRREFAAMGGYLTDAGEVFLDRVEHFVQAVAVYEDQIFKKRTRIQHAYENN
EEMKLKSRRDTNEEPHTSASDKVKLGEPGYKERYYSEKFGLWEPKKFDEVRMEVVLKYVE
GLCWVCRYYYQGVCSWQWYYPYHYAPFASDLEGLAELEITFFPGEPFKPFDQLLGTLPSA
SSSAVPEKYRRLMTDPSSPIFYFYPTDFEIDMNGKRFAWQGVVKLPFIDEKKLLAETKKL
EDTLMEEEHFRNSVMFDLLYVHPLHALAAQITFYYRLCNIEDSTWPIDTVSSGGMNGFLW
LTKRNALRQVVASPVSGLGDITDNQVLNITYLNPSQHAHLPKPPEGVIFPAKVLRSIDIK
PFPVLWHEDNRGRNQLGKDRTQVSGAISGPTLGEAAYRLVQNTLNIKSEQTSYRNFRENQ
AINRPRPAGPPGYERVISDGTSTQNSLSNHHAIYRPRAAGQLGFEQDAGQYGYELGYYND
PNFHDRHYLPRGPAVSSKYHVSPNNKQDYRPNVGFKLQDRISYIEQQQDLRNGISALCIE
GGPKMRPPAPASSGAPNSSQVTHVLPQLVPNIAPLPSPPPKWITRPAVGSTEMYSRRQDS
STEHHERPVKKMVYQLKYKPTLNQ
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccgtctttttacaggtggctagcagatcggtaccctttgtgtatcgtggac
gtggtggaagaagagcccggaaaggataataacggcgtgcagctgcctctcgatgtgtct
acccctaaccctaatggcattgagtttgataatttgtatttggatatgaatggtatcatt
cacccatgttttcatccggaaggcaagcctgcgcctaccacttacagtgatgtgtttaaa
tcaatttttgattacattgaccaccttgtttcattggtccgtccaagaaaacttctttat
atggcaattgatggtgtggcccctagggctaaaatgaaccaacaaagaactcgtcgtttc
agagctgctaaagacgctgcagcagctgaagctgaagaagaaagattgagaaaagaattt
gaacttgaggaggaaaatttattgccaaaagaaaagactgaaacatctgattcaaatgtc
atcactcccggcactcactttatggcagttctctctgtagctcttcagtattatgtacag
tgtaggttaaaccatggccctggatggcactttatgaaggtgattctttctgatgcaaat
gttcctggcgagggggagcacaaaattatgtcctacatacgattgcagcgtaacctccct
ggatttgatccaaataccaggcactgctttgttggaaccgatgcagacctgatcatgctt
tccctggcaacacatgaagttcacttctcaatactgagggaggtaatcaatcctcctgga
cgccaggaaaagtgttttctttgtggtcagactggtcatctggctgctgaatgtcacgga
ggaaccaatggcgaagctcaagatgtgaatgggaattttttgaaagatgttcccattcat
aagaagaagtatcagtttctcaacatctgggtcttgagagaatacttgggatatgagatg
gatatcccaaaccctccattcaaaatcgagtttgacagactggtggatgactttgtgttt
ttatgtttctttgttggcaatgactttcttcctcacatgcctaccttagaaattagagag
ggtgccataaatttgctcatttttgtatatagaagggaatttgcggctatgggtggttat
cttactgatgctggtgaggtcttcttggatagagttgaacactttgttcaggcagttgcg
gtatacgaagatcaaatatttaaaaaacgcactcgaatacagcatgcatatgagaataat
gaagagatgaaacttaaatcaagaagagatactaatgaagagccacacacttctgcttca
gacaaggtgaagttgggggagcctggatacaaagaaaggtattattctgagaaatttggt
ttgtgggaaccaaaaaaatttgatgaagtcagaatggaagtggtattgaagtatgtggaa
ggactgtgttgggtttgccgttattattaccaaggtgtctgctcatggcagtggtactat
ccatatcattatgccccatttgcatctgatctcgaaggattagctgaattggaaataacc
tttttccctggggaaccttttaaaccctttgatcagcttttaggaaccctaccatctgca
agctcaagtgctgttcctgagaaatacaggagactgatgactgatccttcatctcccatt
ttttatttctacccaactgattttgaaattgacatgaatgggaagcgttttgcttggcag
ggggttgtcaaattgcctttcattgatgagaagaaattgcttgccgaaactaagaaactt
gaagacactttgatggaggaagaacattttcggaatagtgtgatgtttgatttgctgtat
gtccatcctcttcatgcattagctgcccaaattaccttttactatcgtctttgtaacatt
gaagattcgacatggcctattgacactgtttcgagtggcggaatgaatggattcctgtgg
ctaactaagaggaatgcgttacggcaagtggttgcttcccctgtcagtgggttgggagac
attacagataatcaagttttaaacatcacttatcttaatccatctcagcatgctcacctt
ccaaagcctcctgaaggtgtaatttttcctgcgaaggttttgagatctattgacataaaa
cctttccctgtcttatggcatgaagacaacaggggcaggaatcagctgggcaaagacaga
acgcaagtttctggggcaatatccggtcccactttgggagaagctgcgtaccgtttggtt
caaaacacactcaatattaaatcagagcagacgagttatcgcaatttccgggaaaatcaa
gcaataaatagaccaaggccagctggacctcctggttatgaaagagttatttctgacgga
acatctacccaaaattcattaagtaatcatcatgcaatatataggccaagagcagctggg
caattgggatttgagcaggatgctggtcaatatggttatgaactgggctattataatgat
ccaaattttcatgacagacattacctccctcgaggcccagcagttagttctaagtatcat
gtttcccctaataataagcaagactatagaccaaatgtaggtttcaagctgcaagataga
atttcatatatagagcagcaacaggacctaagaaatggcatttctgcgttgtgcatagaa
ggtggcccaaaaatgagaccacctgcgcctgcatcttccggagctccaaattctagtcaa
gtaactcatgtacttccccaactggtgcccaacatcgctccacttccatcaccaccccct
aaatggatcactagacctgcagttgggagtacagaaatgtattccagacgacaagatagt
agtacagagcatcatgaaagaccggtgaagaagatggtctaccagctcaaatacaagccc
acgctgaaccagtga
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