Peptoniphilus sp. ING2-D1G: ING2D1G_1176
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Entry
ING2D1G_1176 CDS
T03807
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ped
Peptoniphilus sp. ING2-D1G
Pathway
ped03030
DNA replication
ped03410
Base excision repair
ped03420
Nucleotide excision repair
ped03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ped00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ING2D1G_1176 (ligA)
03410 Base excision repair
ING2D1G_1176 (ligA)
03420 Nucleotide excision repair
ING2D1G_1176 (ligA)
03430 Mismatch repair
ING2D1G_1176 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ped03032
]
ING2D1G_1176 (ligA)
03400 DNA repair and recombination proteins [BR:
ped03400
]
ING2D1G_1176 (ligA)
Enzymes [BR:
ped01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ING2D1G_1176 (ligA)
DNA replication proteins [BR:
ped03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ING2D1G_1176 (ligA)
DNA repair and recombination proteins [BR:
ped03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ING2D1G_1176 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ING2D1G_1176 (ligA)
MMR (mismatch excision repair)
DNA ligase
ING2D1G_1176 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ING2D1G_1176 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
Auto_anti-p27
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CDZ75316
UniProt:
A0A090HYB0
LinkDB
All DBs
Position
I:complement(1135555..1137552)
Genome browser
AA seq
665 aa
AA seq
DB search
MMDRDLIIKKMEELIEKLNLYNYHYYTLDNPIVEDKEYDKVYYELKRLEEDNDLILPNSP
TIRVGGEILEKFEKHRHLSRLYSMDKAQNYQELLLWDERNRRTLKNSDEKFPEIEYVVEL
KFDGLTINLTYEEGYLVNAATRGNGIIGEEILPQVKTISSIPLQIDYKGTMEVQGEGLMP
LKALEDYNKTHSDKLKNARNAAAGALRNLDTKVTRSRNLTAYFYNVSYISTDEFKTDVEM
KEFLKRNKFNISDKIYKCNNLREVIEKIEYIEKIRNNLEILIDGVTIKINDMETRQFLGY
TNKFPRGSIAYKFEAEEYTTKLIGVNWNVGRSAKVTPTAILEPVDIDGVTVRRATLNNYD
DILRKGVRLNSTVLIRRSNDVIPEILGVVPTDDITEEIEKPSHCPACGTELFQEGVHIFC
PNTLSCEPQLISRLTHFASRDAMNIEGLSEKTVTQLMNELHIKEIPQIYELKKEDLLKLE
GFKEKRSDNLINAIERSKNVYLPNFIYALGINNVGIKTAYDLAAKYKNFSDFRKAQFNEL
IEIKDIGSITADEIVKYFKESHIIEALDKLLVLGIKPYYEEIQKTQNYFSGKKIVLTGTL
SIKRSDLKKQLEILGADVVSSVSSSTDLVIAGESPGSKYDKATELNVKIIDEEELKDILG
GKDGI
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgatggacagagatttgataataaaaaaaatggaagaattaatagagaaattaaatctt
tacaattatcactactacactttggataaccctatcgtcgaggataaggaatatgacaag
gtatactatgagcttaaaaggcttgaagaggataatgacttgattcttcccaattcccct
accataagagtcggtggagaaattcttgaaaagtttgaaaaacacagacatttaagcaga
ctttattctatggacaaagctcaaaactatcaagaactgttgttatgggatgaaagaaac
agaagaactttaaaaaacagcgatgaaaagtttcccgagatagaatatgtagtcgaactt
aaatttgacggcttaaccataaatctaacctatgaagagggatacttagtaaatgctgcg
acgaggggaaacgggataatcggagaggaaattcttccacaggtaaaaaccatatcttca
atccctttgcaaatagattacaaagggacgatggaggttcaaggagaaggtttaatgccc
ttgaaagccttggaggattacaataaaactcattcggacaaacttaagaatgcgagaaat
gcagcggcgggcgcccttagaaatttagacaccaaggttacccgttccagaaatttgaca
gcatatttttacaacgtaagttacatttccactgatgaatttaaaacagatgtggagatg
aaagaatttttaaagagaaataaatttaatataagcgataaaatatataaatgcaataat
ttaagagaagtcatagaaaaaattgaatacattgaaaaaataaggaataatctggaaatt
ttaattgacggtgttacaataaaaatcaatgatatggaaaccagacagtttctcggatac
acaaacaaattcccaagagggtctattgcgtataaatttgaggctgaagagtacacaaca
aaattaataggagtaaattggaatgtcggcagatcggcaaaggttactcctacggccata
cttgaacccgtagatatagatggagtaactgtaaggcgagcaacacttaacaattatgac
gatatattgagaaagggcgtaagacttaactccacagtccttatcaggaggtcaaacgat
gtaataccggaaatactgggagtagttcctacagatgatatcactgaagagatagaaaag
cccagtcattgcccggcttgcggaaccgaattgttccaagagggtgtgcatatattttgt
ccgaatactctttcatgcgaacctcagttaatttcaaggctgactcatttcgcttcacga
gatgcaatgaacattgagggacttagcgaaaaaactgtaacacagttgatgaatgaactt
cacataaaggaaattccacagatttatgagcttaaaaaagaagatcttttaaaacttgaa
ggctttaaagaaaaaaggagcgataatctcataaatgccattgaaagaagcaaaaatgtg
tacttgcccaattttatctatgccctgggtataaataacgtcggtattaaaacagcctat
gatttagccgccaagtacaaaaatttttctgatttcagaaaagctcagttcaatgaactc
attgaaataaaggatataggaagtattacggcagatgaaatcgtaaaatattttaaagag
agccatattatagaggccttggataaattacttgtgttggggattaaaccctattatgaa
gaaatacaaaaaacacaaaactatttttcaggtaaaaaaatagttttaaccggaactctc
agtataaaacgctcggatttaaaaaagcaactggaaattctcggagcagatgttgtaagc
tcggtatcaagcagtacagatctggtaatagcgggagagtcgccgggttcaaagtatgat
aaagctacagaattaaatgtaaaaataatagatgaagaagaactaaaggatattttagga
ggtaaggatggaatctaa
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