Phycicoccus endophyticus: H9L10_08435
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Entry
H9L10_08435 CDS
T06776
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pei
Phycicoccus endophyticus
Pathway
pei03030
DNA replication
pei03410
Base excision repair
pei03420
Nucleotide excision repair
pei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9L10_08435 (ligA)
03410 Base excision repair
H9L10_08435 (ligA)
03420 Nucleotide excision repair
H9L10_08435 (ligA)
03430 Mismatch repair
H9L10_08435 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pei03032
]
H9L10_08435 (ligA)
03400 DNA repair and recombination proteins [BR:
pei03400
]
H9L10_08435 (ligA)
Enzymes [BR:
pei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H9L10_08435 (ligA)
DNA replication proteins [BR:
pei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H9L10_08435 (ligA)
DNA repair and recombination proteins [BR:
pei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H9L10_08435 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H9L10_08435 (ligA)
MMR (mismatch excision repair)
DNA ligase
H9L10_08435 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H9L10_08435 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
RNA_lig_T4_1
HHH_3
Nlig-Ia
Zn_ribbon_TFIIB
Herpes_capsid
Zn_ribbon_CLPX_N
Motif
Other DBs
NCBI-ProteinID:
QNN48378
UniProt:
A0A7G9QYF3
LinkDB
All DBs
Position
complement(1747189..1749462)
Genome browser
AA seq
757 aa
AA seq
DB search
MSETSTDPAEQEPADAVPDDVRHEWGVLAEEARGHQFAYHVRDAPTVSDGEYDALMRRLT
ALEEAHPGLRTPDSPTQQVGGAVFATDFTAVDHLERMLSLDNAFSADELAAWAARVERDA
GGAELHYLCELKIDGLAVNLLYEDGRLTRALTRGDGRTGEDVTLNVRTVEGIPTELHGED
LPELVEIRGEVFFPIEAFADLNARQVAQGRPPYANPRNAAAGSLRQKDPRVTATRPLRML
VHGIGARRGLEITRQSQAYELLHGWGLPTSSHYRVLDTIEQVQEFVDRYAEQRHSVEHEI
DGVVVKVDEIGVQRQLGATSRAPRWAMAYKYPPEEVNTRLLDILVGVGRTGRATPYAVLE
KVLVAGSQVRQATLHNQDVVRAKGVLIGDTVVLRKAGDVIPEILGPVVALRDGSEREFVM
PTDCPECGTPLRPMKEGDVDLRCPNARSCPAQVRGRVEYIGSRAALDVEALGEVTAAALT
QPRSPAEPPLVTEAGLFDLDLARLVPIEVVVRDAETGEPKVDDDTGEPVVRRPFQKLGEA
TYPPGTEDLTPAERRARGIRKDHREVLPSAQAETLLRELEAAKGKDLWRQLVSLNIRHVG
PVAARALAGWFGSLEAIESASLEELAEVDGVGPVIAEAVVDWLALDWHQEIVRAWRAAGV
TFATPGHPGPGRADGGGGVLSGRTVVVTGSLEGYSRDSAKEAVLARGGKASGSVSKKTDY
VVVGANAGTKEAKARELGLTILDEAQFVRLLETGSPD
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagacctcgaccgaccccgccgagcaggagcccgccgacgccgtcccggacgac
gtgcgtcacgagtggggggtgctggccgaggaagcgcgcgggcaccagttcgcctaccac
gtccgggacgcgccgacggtcagcgacggcgagtacgacgcgctgatgaggcggctcacc
gcgctcgaggaggcccatccggggctgcgcacccccgacagcccgacccagcaggtcggt
ggggcggtcttcgccaccgacttcacggcggtcgaccacctcgagcgcatgctcagcctc
gacaacgccttctccgcggacgagctcgcggcctgggcggcgcgggtcgagcgcgacgcc
ggtggggccgagctgcactacctgtgcgagctgaagatcgacgggctggccgtcaacctg
ctctacgaggacggtcggctcacccgggccctgacccgtggcgacggccgcaccggcgag
gacgtcaccctcaacgtccggaccgtcgagggcatccccaccgagctgcacggcgaggac
ctgcccgagctcgtcgagatccggggtgaggtcttcttcccgatcgaggccttcgccgac
ctcaacgcccggcaggtcgcgcagggccggccgccgtacgccaacccccgcaacgcggcc
gcgggctcgctgcggcagaaggacccccgggtcaccgcgacccgcccgctgcggatgctc
gtccacggcatcggggcccgcaggggcctcgagatcacccggcagtcccaggcctacgag
ctgctgcacggctggggtctgcccacgagcagccactaccgggtgctcgacacgatcgag
caggtccaggagttcgtcgaccggtacgccgagcagcggcacagcgtcgagcacgagatc
gacggcgtcgtggtcaaggtcgacgagatcggggtgcagcgccagctgggggccacgagc
cgcgcgccacgctgggcgatggcgtacaagtacccgcccgaggaggtcaacacccggctc
ctcgacatcctcgtcggcgtcgggcgcaccgggcgggccacgccctacgcggtcctggag
aaggtgctcgtcgccggcagccaggtgcgccaggccacgctgcacaaccaggacgtcgtg
cgggccaagggggtgctcatcggcgacacggtggtgctgcgcaaggccggcgacgtcatc
cccgagatcctcggcccggtcgtggccctgcgcgacggcagcgagcgcgagttcgtcatg
cccaccgactgccccgagtgcggcacccccctgcggccgatgaaggagggcgacgtcgac
ctgcgttgcccgaacgcccggtcctgcccggcccaggtgcgcgggcgggtcgagtacatc
ggctcccgggcggcgctcgacgtcgaggccctcggcgaggtcaccgcggccgcgctcacc
cagccacggtcgcccgccgagccgccgctggtcaccgaggcggggctgttcgacctcgac
ctcgcccggctggtccccatcgaggtcgtcgtccgcgacgccgagaccggtgagcccaag
gtcgacgacgacaccggcgaaccggtcgtgcgccgccccttccagaagctgggcgaggcg
acctacccgccgggcaccgaggacctgacacccgccgaacgccgggcccggggcatccgc
aaggaccaccgcgaggtgctgccgtcggcacaggccgagaccctgctgcgcgagctcgag
gcggccaagggcaaggacctctggcgccagctggtgtccctgaacatccggcacgtcggg
ccggtggcggcccgcgcgctcgcggggtggttcggctcgctcgaggccatcgagagcgcg
tcgctcgaggagctggccgaggtcgacggcgtcgggccggtcatcgccgaggcggtggtc
gactggctcgcgctcgactggcaccaggagatcgtccgggcctggcgcgcggccggggtc
accttcgcgacgccgggccaccccggcccggggcgcgccgacggcggcgggggagtcctg
tccgggaggaccgtggtcgtcaccgggtccctcgagggctactcgcgcgactcggccaag
gaggccgtcctcgcgcgcggcggcaaggcgtccggctcggtgtcgaagaagaccgattac
gtcgtcgtcggcgcgaacgccggcacgaaggaggccaaggcccgcgagctcgggctgacg
atcctcgacgaggcgcagttcgtccgcctgctcgagaccgggtcccccgactga
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integrated database retrieval system
