Pedobacter aquae: FYC62_00175
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Entry
FYC62_00175 CDS
T06312
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pej
Pedobacter aquae
Pathway
pej03030
DNA replication
pej03410
Base excision repair
pej03420
Nucleotide excision repair
pej03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FYC62_00175 (ligA)
03410 Base excision repair
FYC62_00175 (ligA)
03420 Nucleotide excision repair
FYC62_00175 (ligA)
03430 Mismatch repair
FYC62_00175 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pej03032
]
FYC62_00175 (ligA)
03400 DNA repair and recombination proteins [BR:
pej03400
]
FYC62_00175 (ligA)
Enzymes [BR:
pej01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FYC62_00175 (ligA)
DNA replication proteins [BR:
pej03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FYC62_00175 (ligA)
DNA repair and recombination proteins [BR:
pej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FYC62_00175 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FYC62_00175 (ligA)
MMR (mismatch excision repair)
DNA ligase
FYC62_00175 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FYC62_00175 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
Zn_ribbon_Top1
Dna2
Motif
Other DBs
NCBI-ProteinID:
QEK50254
UniProt:
A0A5C0VH01
LinkDB
All DBs
Position
complement(33330..35345)
Genome browser
AA seq
671 aa
AA seq
DB search
MSTVQIKEQIAALVKELKQHNYNYYVLAMPSISDYDFDIKLKELEALEKQYPELVHPDSP
TLKVGGEITKSFKTVVHKWPMLSLGNTYNAQDLIDFDQRIKKAIGDNFQYVCELKFDGLS
ISLTYENGKLLKAVTRGDGTKGDDVTANIKTLRSIPLSVPHQNVPEHFEIRGEVFMHKAA
FEKLNQERIEQGEQAYANPRNFASGTVKMQDSAEVAKRPLDCFLYFLYADQNPFKTHWES
LQAVKNWGFHVSEESKLCNTIEDVLLFIESWETKRFHLSYDIDGIVIKVNSYAQQQELGF
TAKSPRWAISYKYKAQEVETTLEKVTYQVGRTGAVTPVANLKPVLLAGTTVKRATLHNAN
EISRLDLHENDTVLVEKGGEIIPKVIRVNLEKRKADAAKINYLENCPECGTQLIRKEGEA
VHYCPNDEGCPPQIVGKMQHFISRKAMNIDGIGSETIEALYQKGLIRHISDIYLLKNHET
TLKSMDRFGEKSVNNMLDGIERSKQVPFEKVLFGLGIRYIGETVAKKLAFHFKNIQALQN
ASFEELITADEIGERIAQSILEYFADEKHQQEINRLKEIGLQFEIEEKEVILQSSKLAGQ
TFVISGVFEQYSRDELKDIIESNGGKILSGISGKLNYLVAGDNMGPSKLEKANKLNIPII
TDAALLKMLEE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacggtacaaataaaagagcaaatagcagcattagtaaaagagctaaaacagcat
aattacaattattatgtgttagctatgccaagcatttctgattacgatttcgacatcaag
ctaaaagaattagaagctcttgaaaaacagtatccagaacttgtacaccctgattctcct
actttaaaagttggcggagaaattactaaaagcttcaaaaccgttgttcataaatggccc
atgctttccttaggcaatacctataatgcacaagatttaatagattttgatcaaagaatt
aaaaaagccataggcgataattttcaatacgtttgcgagttaaaatttgatggtttatct
atcagtttaacttatgaaaacggaaaattactaaaagccgttacccgtggagatggcacc
aagggcgatgatgtaaccgcaaatatcaaaacattaagaagtatcccgctgagtgtccct
catcaaaatgttccagaacattttgagatacgtggtgaggttttcatgcataaagctgct
tttgaaaaacttaaccaagaacgtatagaacagggcgaacaagcttatgcaaatccaaga
aactttgcatctggaactgtaaaaatgcaagattctgccgaagttgctaaacgcccgcta
gactgctttttgtatttcctttatgcagaccaaaatccgtttaaaacgcattgggaaagt
ttgcaagctgtaaaaaattggggttttcatgtttctgaggaaagtaaactatgcaatacc
attgaagatgttttgctatttatagaaagctgggagactaaaagatttcacttaagctac
gacattgatggtatcgttattaaggtaaatagctatgcccaacaacaagaattaggcttt
acagcgaaatctccacgttgggcaatcagttataaatataaagctcaagaagtagaaacc
actttagaaaaagtaacttaccaagttggtagaaccggggctgtaacgcctgtagctaat
ttaaaacctgttttattggcgggtacaacagtaaaaagagcaactttacacaacgctaac
gaaatttcaagacttgatttacatgaaaacgatactgttttagtagaaaaaggcggagaa
attatcccgaaggttatacgcgtaaatctagaaaaaagaaaagccgatgctgcaaaaatc
aattatttagaaaattgtccagagtgcggcacacagctcatcaggaaagagggagaagct
gttcattattgccctaatgacgagggttgtccaccacaaattgtaggtaaaatgcagcat
ttcatcagccgtaaggcaatgaatattgatggaataggttctgaaactatagaagcgctt
tatcagaaaggcttaattaggcatattagcgatatatacttattaaaaaaccacgaaact
accttaaaaagtatggataggtttggagaaaaatctgtcaataacatgctagatggtata
gagcgctctaagcaagtgccctttgaaaaagtgcttttcggcttaggaatcagatatatt
ggtgaaactgttgctaaaaaattagcttttcattttaaaaatatccaagctttacaaaat
gcttcttttgaagagctcattacagcagatgaaattggagaacgcatagcacaaagtatt
ttagaatattttgctgatgaaaaacatcaacaagaaataaatcgcttaaaagaaataggt
ttacagtttgaaattgaagaaaaggaagtaattttacagagttcaaaattagctggccaa
actttcgttatatcgggtgtgtttgaacaatacagtcgagatgagcttaaagacatcatt
gaaagtaatggaggtaaaatattgagcggtatctctggcaagttaaattacttggtagcc
ggcgataatatggggccttctaaattagaaaaagccaataaattaaacattcctatcatt
actgatgcggctcttttaaagatgttggaggaataa
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integrated database retrieval system
