Pedobacter sp. KBS0701: FFJ24_001620
Help
Entry
FFJ24_001620 CDS
T06361
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pek
Pedobacter sp. KBS0701
Pathway
pek03030
DNA replication
pek03410
Base excision repair
pek03420
Nucleotide excision repair
pek03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FFJ24_001620 (ligA)
03410 Base excision repair
FFJ24_001620 (ligA)
03420 Nucleotide excision repair
FFJ24_001620 (ligA)
03430 Mismatch repair
FFJ24_001620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pek03032
]
FFJ24_001620 (ligA)
03400 DNA repair and recombination proteins [BR:
pek03400
]
FFJ24_001620 (ligA)
Enzymes [BR:
pek01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FFJ24_001620 (ligA)
DNA replication proteins [BR:
pek03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FFJ24_001620 (ligA)
DNA repair and recombination proteins [BR:
pek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FFJ24_001620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FFJ24_001620 (ligA)
MMR (mismatch excision repair)
DNA ligase
FFJ24_001620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FFJ24_001620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
HHH
HHH_3
Nlig-Ia
Dna2
RNA_ligase
Zn_ribbon_TFIIB
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
QDW23593
LinkDB
All DBs
Position
complement(446406..448418)
Genome browser
AA seq
670 aa
AA seq
DB search
MPLTAIKEEMDALVAELNQHNYNYYVLAMPTIGDYEFDKKLKHLAGLEKANPDFADPNSP
TQRVGGDITKNFITVNHKYPMLSLGNTYNEQDLRDFDERIRKAIGDNFQYVCELKFDGLS
ISLTYENGKLLRAVTRGDGTKGDDVTNNIKTIHTIPHQIKSTVAPDHFEIRGEIFMHKAA
FLRLNAAREELGEIPYANPRNFASGTIKMQDSKEVAKRPLDGFIYFLYTDKNEFKTHWES
LNAVKDWGFHVCEHNRLVSDIDAVLEFIHHWENERFKLSYDIDGIVIKVNSYAQQQELGF
TSKSPRWAISYKYKAAEVETVLEKVTYQVGRTGAVTPVANLKPVLLAGTTVKRATLHNAN
EIDRLDLHEGDTVYVEKGGEIIPKIIIVNLDKRLPGATKVQYLHNCPECGTELIRREGEA
VHYCPNDEGCPPQIVGKIQHFISRKAMNIDGLGDETIETFYKHGLVNHISDLYTLYQKSD
QLKNLDRFGERSIENMLTGIEKSKEMPFEKVLFGLGIRYVGETVARKTAAGVKNIDNLAK
ATVEELIAIDEIGQRIAESIVEYFGKSEHLKQVELLKLAGLQFEIEEKVITLDSDRLIGK
TFVISGVFENFSRDELKDMIEANGGKMLSSISGKLNYLVAGDNMGPSKLEKANKLNVPII
SDAELLEMIK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgcctttaactgcaataaaagaagaaatggatgccctggtggccgaattaaaccagcac
aattataactattatgtgctggctatgcccaccattggagattatgagtttgataaaaaa
ttaaaacacctcgccgggctagaaaaagcaaatcctgattttgccgatccgaattcgcct
acacagcgtgttggtggcgatattaccaaaaactttattaccgtaaaccataaatacccc
atgttatcattggggaatacctataatgagcaagatctccgtgattttgacgaacgcatc
cgtaaagccattggcgataatttccaatatgtttgtgagctaaaatttgatggcctttct
atcagtcttacttacgaaaatggcaagcttttacgtgcggttacccgtggtgatggcacc
aaaggcgacgatgtaaccaataatataaaaaccatccataccattccacaccagatcaaa
tcgaccgttgcccctgaccatttcgaaatccgtggggagatttttatgcacaaagcggca
tttttacgcttaaatgctgctcgtgaagaacttggtgagatcccttatgcaaatcccaga
aattttgcttcgggcaccataaaaatgcaggatagcaaggaagttgcaaaacggcctttg
gatggttttatttatttcctgtacaccgataaaaacgaattcaaaactcattgggaaagt
ttaaatgctgtaaaagattggggtttccatgtttgtgaacataaccgactggtttctgat
atcgatgcagttctggaatttatccaccattgggaaaacgaacgttttaaattaagttac
gatattgatggtattgtgattaaggtaaacagttatgcacaacaacaggaattggggttt
acgtctaaatcaccacgctgggccatttcatataaatacaaagcagcagaggttgaaact
gttttagaaaaagtaacctatcaggtaggcagaaccggtgcagttacgccggttgccaac
ttaaaacctgttttattggccggtactacggttaaacgtgctacattgcacaatgcgaac
gaaatagatcgtttagatttacatgaaggtgataccgtttatgtagaaaaaggtggtgag
attattccaaaaattatcatagtaaatttagataagcgattgcccggcgctacaaaggtt
caatatttacacaattgtcccgaatgtggaacagaattgatcaggagagaaggagaagca
gtgcactactgtcctaatgatgaaggttgtccgccgcagattgttggaaaaattcagcac
tttatctcgcgcaaggccatgaatattgatggactcggcgatgaaaccatcgaaaccttt
tacaaacatgggcttgtaaatcatattagtgatttatatactttgtatcaaaaatcggat
cagctcaaaaacttagaccgttttggagaacgttcgatagaaaacatgcttaccggaatc
gaaaaatcgaaggaaatgcctttcgaaaaagtgcttttcggcctgggcatccgttatgta
ggcgaaacagtagcaagaaaaactgccgctggtgtaaaaaatatcgacaatcttgctaag
gctaccgtagaggaattaatcgccattgatgagatcggacagcgcattgcggagagtatt
gttgagtattttggaaaatctgagcatttaaagcaggtagaattattaaaattagcagga
ttacagtttgaaattgaagaaaaggtaattacgctggatagtgatagacttattggaaaa
acattcgtaatttcgggcgtttttgaaaactttagccgcgatgagctcaaagatatgatt
gaggccaatggaggaaagatgctgagcagcatttcgggcaaattgaattacctcgtagca
ggcgataatatgggtccatcgaaactggaaaaggcaaataaactaaacgttccgatcatc
agcgatgctgagcttttggaaatgataaaatga
DBGET
integrated database retrieval system
