Porphyromonas endodontalis: LA319_06705
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Entry
LA319_06705 CDS
T08002
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pend
Porphyromonas endodontalis
Pathway
pend03030
DNA replication
pend03410
Base excision repair
pend03420
Nucleotide excision repair
pend03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pend00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LA319_06705 (ligA)
03410 Base excision repair
LA319_06705 (ligA)
03420 Nucleotide excision repair
LA319_06705 (ligA)
03430 Mismatch repair
LA319_06705 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pend03032
]
LA319_06705 (ligA)
03400 DNA repair and recombination proteins [BR:
pend03400
]
LA319_06705 (ligA)
Enzymes [BR:
pend01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LA319_06705 (ligA)
DNA replication proteins [BR:
pend03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LA319_06705 (ligA)
DNA repair and recombination proteins [BR:
pend03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LA319_06705 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LA319_06705 (ligA)
MMR (mismatch excision repair)
DNA ligase
LA319_06705 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LA319_06705 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
UPF0758_N
PTCB-BRCT
HHH_8
HHH_3
BRCT_2
ILEI
zinc-ribbons_6
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UBH64225
LinkDB
All DBs
Position
complement(1593636..1595651)
Genome browser
AA seq
671 aa
AA seq
DB search
MPGVEERIEQLRSEIEQHNYRYYVLSTPLISDVEFDRLMQQLIDLEAQHPELITPTSPTQ
RVGSDRNPSFVSVRHSVPMLSLSNTYNYDEVREFWHRLHSGNGSLTLDCELKFDGLSIAV
VYLNGELSQAITRGDGIEGDDVTNNIRTIRSIPLRLLGENIPPRVEVRGEILLPYDEFER
INSQRLAEGKDPFANPRNAASGTLKQLDTSVVSERRLDAFFYYLLVNGLDIDSHAERLHL
AKSWGIKVSDYSAQCSTLEDIYAFIDHWDTARRSLPFATDGIVLKVDSLALQQTIGFTAK
GPRWAIAYKYQPERASTQLIDVSYQVGRTGIITPVANLAPILISGTVVRRATLHNADFIL
SLDLHQKDYVYVEKGGEIIPKIAGVDKSLRQSDALPIVFPSTCPDCGTTLIKAEGEVGYF
CPNKLGCPMQIKGSIEHYTQRKAADITIGPETIDALYSRGFVKSICDLYRLTADDILSLD
GFKECATGNLLGSIEQSKSRPFPAILFGLGIRYVGENVAKILTRTFNSIETLMEASQEEL
QTIDGIGERIAESIVSFFADERNQKIIAALKEFGVTLSNPVEEGISEAISRPLEGKSIVI
SGTFSQHTRDEYTQIIEQLGGKKVSSISQKTSFILAGEDMGPSKREKALSLGIPLLSEDE
FLALVDLPNTK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgcccggagtagaagagagaatagagcagctaaggagcgaaatcgaacagcataattat
cgctattatgtactttctacgcctctgatttctgacgtagaattcgatcgtctgatgcaa
caattgattgatctggaagcacagcatcccgagcttattacccccacctctcctacccaa
cgagtaggaagtgatcggaatcccagctttgtctcagtgcggcattccgttcctatgctt
tccttatccaatacctacaattatgacgaggtgcgggagttttggcaccgtttgcactcg
gggaatggctctttgaccttggattgcgaactcaagttcgatggtctttccatcgctgtc
gtctatctcaatggggagcttagccaagcaattactagaggagacggcattgagggtgac
gatgttacaaacaatattcgcacgattcgctcaatcccccttcggctattaggggagaat
atcccccccagagtagaagtgagaggggagattttactcccatatgatgaatttgaaagg
ataaatagccaacgattggcagagggaaaggatccatttgccaacccgagaaatgccgct
tcaggcaccttgaaacagttagataccagcgtagtatcagagcgcagacttgatgctttt
ttctattatttattggtgaatgggctagatatagatagccatgcagaacgtcttcatttg
gcaaagtcttggggaataaaagtctcggactacagtgcccagtgctctacgctagaggat
atatacgcttttattgaccattgggatacagcacgtcgatcccttcctttcgccaccgat
ggaattgtcctcaaagtggattcccttgcattacagcaaacaatcggttttacggccaaa
ggtccacgttgggctatcgcctataaataccaaccggagcgggcctctactcagttgatt
gatgtctcctatcaagtgggaagaacggggattattacccccgttgcaaaccttgctccc
atactgatatcgggcacggtagtacgccgagccactctgcacaatgctgactttatcctc
tcattggatttgcatcaaaaggactatgtatatgtggaaaaagggggtgaaatcatccct
aaaatagcaggagttgacaaatctcttcggcagtctgatgccctgccaatcgtctttcct
tctacgtgtccggactgtggtacgacccttataaaggctgaaggtgaagtcggatatttc
tgtccgaataaactagggtgccctatgcaaataaagggctccatagagcattatacgcaa
cgaaaggctgccgatattaccattggccccgagacgatagatgccctttacagccgcggt
tttgtcaaatccatctgcgatttgtatcgccttacagccgatgatattctctctcttgat
gggtttaaagaatgcgctacggggaatctcctgggaagtatagagcaatccaagtcgcgt
ccgttccccgcaatcttgtttggattgggtattcgctatgtgggagaaaacgtggcaaaa
atcctaactcgcaccttcaattcgattgaaaccctaatggaagcctctcaagaggagcta
caaactattgatggtattggtgaacgcattgctgagagtattgtttctttctttgccgat
gagcgcaatcagaagattattgcagccctcaaagagtttggagtgaccctatctaaccct
gtggaggaaggcatttctgaggcgatttcgcgccctctggaggggaaatctattgtgata
agcggaacctttagtcagcatactcgggacgagtatacgcagattatagagcagttagga
gggaagaaagtctcctctatttcccagaaaacatcttttatcttagctggagaagatatg
ggccccagcaaacgagagaaagccctctctctgggtattcctcttctatccgaagatgaa
tttctcgcactcgtagacctcccaaacacaaaatag
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