Pedobacter sp. PACM 27299: AQ505_04725
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Entry
AQ505_04725 CDS
T04140
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pep
Pedobacter sp. PACM 27299
Pathway
pep03030
DNA replication
pep03410
Base excision repair
pep03420
Nucleotide excision repair
pep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AQ505_04725
03410 Base excision repair
AQ505_04725
03420 Nucleotide excision repair
AQ505_04725
03430 Mismatch repair
AQ505_04725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pep03032
]
AQ505_04725
03400 DNA repair and recombination proteins [BR:
pep03400
]
AQ505_04725
Enzymes [BR:
pep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AQ505_04725
DNA replication proteins [BR:
pep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AQ505_04725
DNA repair and recombination proteins [BR:
pep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AQ505_04725
NER (nucleotide excision repair)
GGR (global genome repair) factors
AQ505_04725
MMR (mismatch excision repair)
DNA ligase
AQ505_04725
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AQ505_04725
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
PTCB-BRCT
HHH
Dna2
Auto_anti-p27
HHH_3
F55H2_N
RNA_ligase
Ribosomal_aS21
Motif
Other DBs
NCBI-ProteinID:
ALL04851
LinkDB
All DBs
Position
complement(1117313..1119325)
Genome browser
AA seq
670 aa
AA seq
DB search
MPLTEIKDKMEALVKELNQHSYNYYVLAMPTIADYEFDKKLAELEQLEKAHPEFANPNSP
TQKVGGDITKNFTTVAHRWPMLSLGNTYNEQDLRDFDERVRKTIGDQFEYVCELKFDGLS
ISLTYENHKLVRAVTRGDGTKGDDVTTNIKTIRNIPHQLKNETVPPLFEIRGEIFMHRAA
FDRLNREREEFGEVQYANPRNFAAGTIKMQDSKEVARRPLDCFLYSLNTDKNYFKTHWES
LESLKSWGFNVCEHTELSSTIDDVLAFVHKWEEQRFQLSYDIDGIVIKVNSYAQQQELGF
TAKSPRWAISYKYKAQEVETILEKVTYQVGRTGAVTPVANLKPVQLAGTTVKRATLHNAN
EIERLDLHEGDTVFVEKGGEIIPKIIHVNLEKRKPGALKIHYLSACPECNTPLIRKEGEV
AFYCPNDEACPPQIVGKIQHFISRKAMNIDGLGDETIETFYQKGLVAHISDLYTLHERSE
DLKTLERFGERSIENMLKGIENSKQMPFEKVLFGLGIRFVGETVAKKLAVGTKNIDKLMT
ATLEELVAIDEIGQRIAESIIEYFAKPEHIRQIELLKSYGLQFEVVEKEITLQSDKLTGK
TFVISGVFENYSREELKEIIESNGGKILSGISAKLNYLVAGDNMGPSKLEKANKLNVPLI
SQDGLLALLK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgccacttacggagatcaaagacaaaatggaagcattggttaaggagcttaaccaacat
agttacaattattatgtattggcaatgcctaccattgcagattacgagttcgacaagaaa
ttagcagagctggagcaattagaaaaagcacatccagaattcgcaaatcccaactcccct
acccaaaaagttggtggagacatcaccaaaaactttacaaccgtagcccaccgatggcca
atgctttcgctgggaaatacctataacgaacaagacctgcgtgattttgacgagcgcgtc
aggaaaacaattggagaccaatttgaatatgtatgtgagcttaaatttgatgggctttcc
atcagcttaacctacgaaaaccacaaattggttcgcgccgttacccgcggtgatggtacc
aaaggtgatgatgtgaccaccaatattaaaaccatcaggaacatccctcatcagttaaaa
aatgaaactgttcctccgctatttgaaatcagaggggaaatatttatgcaccgtgcagcc
ttcgatcgcctcaacagagagcgtgaagaatttggagaggtacaatatgccaaccctaga
aattttgccgcaggaaccattaaaatgcaggattctaaagaagtggcgagacgtccatta
gactgtttcttatattctctgaatactgataaaaactatttcaagacgcattgggaaagt
ttagaaagcttaaaaagctggggtttcaatgtatgcgagcatacggagctgagcagtacc
atcgatgatgtacttgcttttgtacacaaatgggaagaacagcgtttccaactttcttat
gatattgatggaatcgtgatcaaagtaaatagttatgcgcagcagcaggaattgggcttt
acagccaaatctccacgatgggcaatttcttataaatacaaggcgcaggaagtcgaaact
atcctagagaaagtgacttatcaggtaggacgtactggtgcggtgacgccagtagcgaat
ctaaaaccggttcagcttgccggaacaacggtaaaaagagctacgctgcacaatgcgaat
gagatcgagcgactagatcttcatgaaggtgataccgtatttgtagaaaaaggcggagag
atcattcctaagatcatccatgtaaacctagagaaacgtaagccaggagctttaaaaata
cattacctcagcgcatgcccggaatgtaacacgccattgatcagaaaagaaggagaagta
gccttctactgtcccaatgatgaagcttgtccgccgcaaattgtaggtaaaatccagcat
tttatcagccgaaaggcgatgaatatagacggattgggcgatgaaacgatcgaaaccttt
tatcaaaaaggactggttgcccacatcagcgatctttataccctgcatgaaagatcagaa
gatttgaaaacattggaacgtttcggtgaacgttctatagaaaatatgctgaaaggaatt
gaaaactctaagcaaatgccttttgaaaaagtgctttttggattaggaattagatttgtt
ggggaaactgttgcaaaaaaactggctgttggaactaaaaatatcgacaagttaatgact
gcaacgctggaagaactcgttgcaattgatgaaatcggacaaagaattgcggaaagcatc
atagaatacttcgcaaaaccggaacatatccgtcaaattgagctgttaaagtcttatgga
ctgcagttcgaagtggtagaaaaagaaattacgctgcaaagtgacaaattaactggaaaa
acattcgtaatttcgggagtttttgaaaattacagtagggaagaactcaaagagataatt
gaaagcaatggtggtaagatcctgagcggcatttccgcaaaactcaactaccttgtcgcg
ggtgataatatgggaccttccaaattggaaaaggcaaataaattgaatgtccccctgatt
tcacaggatggcctattagcgttattgaagtaa
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