Phalaenopsis equestris: 110033959
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Entry
110033959 CDS
T05601
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
peq
Phalaenopsis equestris
Pathway
peq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
peq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
110033959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
peq03400
]
110033959
Enzymes [BR:
peq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110033959
DNA repair and recombination proteins [BR:
peq03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
110033959
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
110033959
NCBI-ProteinID:
XP_020593800
LinkDB
All DBs
Position
Unknown
AA seq
1257 aa
AA seq
DB search
MTDSTVRFGLLCSMFEAMVRDRSAAKKRKRFRTFLDLVYTGRDFFSAIRLILPSLDRERG
TYGLKESALAAALVDALGISKDSEDALRLINWRKGGARTGANAGNFALVAADILQRRQGS
ASGGLTIREVNDALDQLSLKEGRGEKAGVLSGFIKKTNAVEMKWIIMIILKDLKMGISEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLALRISDATTAW
RKFHGKQIVAECKFDGDRIQIHRNGKEIHFFSRNFLDHTEYLQGMSDVILQNILVDRCIL
DGEMLVWDTSTNRFAEFGSNQEIAKAAMQGLQGDRQLCYVAFDILYAGDTSVIHQSLTER
HELLHKVVKPLRGRLEILVPNDGLNLRHPVGQPCWSIIVNCVEEVEKFFKETVENRDEGI
VLKDLSSKWEPGDRSGKWLKLKPDYIHAGADLDVLIIGGYFGSGRHGGEVAQFLVGLAER
SDSTSFPKRFLSFCRVGTGLTDEDLDVLITKLKPHLRKNEYPKRSPPFYEVTNNSKERPD
VWVESPDKSVILSITSDIRTIKSEVFAAPYSLRFPRIQRVRYDKQWHECLDVESFRDLVQ
SSNGTTQRRVNQGALQQLNGKPKRIARKGEKRSISVITPHSIQADVSAVKKTLIFANMMF
YFVNVPSSSSVDYFHRLVIENAGKFSMNLNDTVTHCIAAEKKGIKYQAAIRHGDIIHYSW
FLDCCNQKKLVHLQPKYFLFFADSSKKKYQEEIDAFSDYYYWDVDIEDIKQIFCNMIGSV
NSNSKMIEHYRKKYLPVRRMGLFHGCFIYLHEMPFRNTEFKVISELAMRRMKLEIAMHGG
NVCDDMEPATHLLVYSVVGSHDFDEIYESIPSTQRHLLHQRKFKTLLDLPHLILVFPLLL
SAFYRLLKHREQIFCNMIGSVNSNSKMIEHYRKKYLPVRRMGLFHGCFIYLHEMPFRNTE
FKVISELAMRRMKLEIAMHGGNVCDDMEPATHLLVYSVVGSHDFDEIYESIPSTQRHLLH
QRKLHVLVHNWLQDSLDRSVKLPENDYNMKPDSLEEYAFEKKDNPTFPAIKCEAEEQNSA
ASGKRKRGRRPAGQAGVVRPARRPTRRSRAKTGKHSAKLGSDESDSIDSMEVAPTAYVKE
RGETEQKWRKEEHEEQSVKTERNQEITDLPVEECNSLNLMDIGDKSGDKLEVMTDPIHAM
LLDMIPSLSQTQKRHGEVDPIRVADDEKAVQAREENQNPAKKKVSYKDVAGELLKDW
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgacagactcgacggtgcgcttcggcttgctatgcagcatgttcgaggctatggtgcgg
gaccgatcggcggcgaagaagcggaagcgattccggacgtttttggatctggtctacacc
ggccgcgacttcttcagcgccatccgcctcattctcccttccctggatcgcgagcgcggt
acttacggcctcaaggaatccgcacttgccgccgcactcgtggatgcgctcggcatctcc
aaggactccgaggatgccctccgtctcatcaactggcgtaagggcggggcacgaaccgga
gcaaacgctggaaattttgcactcgttgctgctgatattttgcaacggaggcagggatcg
gcttccggcgggcttacgatcagagaggtgaacgacgcacttgatcaactttccttgaag
gagggaaggggggagaaagctggggttctgtcaggtttcattaagaaaacaaatgcagtg
gagatgaaatggattataatgatcatacttaaagatttgaagatgggaattagtgagaag
agtatttttcatgagtttcatccagacgctgaagacctcttcaatgtgacttgtgacctt
aagcttgtttgtgaaaagctgaaagataggagtcagcggcataaacgacaggatatagaa
gtggggaaagctgttaggcctcagttggctttgcggatcagtgacgctacaactgcatgg
aggaagtttcatggtaagcagattgtggcagaatgcaaatttgatggtgatcgcattcaa
attcatagaaatggaaaagaaatacacttcttctcacggaattttctcgaccacacagaa
tatttacagggaatgtctgatgttattttgcaaaacattttggttgataggtgcatacta
gatggtgagatgttggtttgggatacttccaccaatcgttttgctgagtttggttcaaac
caggagatagcgaaggcagcaatgcagggattgcaaggtgataggcagttatgctatgtt
gcttttgatatactatacgctggagacactagcgttattcaccagagtttgactgaacgg
catgagctgcttcataaggttgtaaaaccattaaggggtcgcttagaaattttggtgcct
aacgatggtcttaacttacgtcacccagttggtcaaccatgctggtctattattgtcaat
tgtgtagaagaggttgaaaagttttttaaagaaactgttgaaaacagagatgaggggatt
gtgctgaaagaccttagttcaaaatgggaacctggtgaccgaagtgggaaatggttgaag
ttaaagcctgattacatacatgctggtgctgatcttgatgttcttattataggtggttat
tttggctctgggcgtcacgggggagaggtggctcagtttttggttggtcttgcagagcgc
tctgattccacaagttttcccaaaaggttcctttccttctgtcgggtgggtactggtctt
acggatgaggatctcgacgttctcattaccaaattgaagccccacttaaggaagaatgaa
taccctaaaagatcgccgcctttttatgaagtaacgaataattcaaaagagagaccagat
gtttgggttgagagccctgataagtcagttattctctctattactagtgatatcagaaca
ataaaatccgaggtttttgctgcaccctacagtttgaggtttccacgcatacaacgtgtg
agatatgacaagcagtggcatgagtgcctcgatgttgaatcatttagggatttggtgcag
tcaagcaatggcactacacaacggagagtaaatcaaggagctttgcaacaacttaatgga
aagcccaaaaggatagcaaggaaaggagaaaaaagaagcatttctgtcatcacaccccac
tccatccaggctgatgtctctgctgtaaagaagacgttgatatttgcaaatatgatgttt
tatttcgtgaatgttccctcatcttcttcagtagattatttccacagactagtaattgag
aatgcaggaaaattttctatgaatcttaatgatacagtaactcattgcatcgcagctgag
aaaaaaggcattaaatatcaagcagccatacgtcatggggatatcatccattattcttgg
tttttggactgttgcaatcaaaagaaacttgtgcatttacaacccaagtactttttgttt
tttgctgattcttccaagaagaagtaccaagaggagattgatgcattctctgattattat
tactgggatgttgacattgaagatataaaacagatattttgcaatatgattggatctgta
aactccaactccaaaatgattgagcattacaggaagaaatatcttccagtgagaagaatg
ggtctgtttcatggttgtttcatttacttacatgaaatgccttttaggaataccgagttc
aaagtaatatcagagctggccatgagaaggatgaaacttgaaattgcaatgcatgggggc
aatgtttgtgacgatatggaacctgcgacacatttattagtctattcagtggttggatca
catgactttgatgagatatatgaaagcattccatcaactcagcgccatcttttacaccag
agaaagtttaaaacgcttctggatctgccccacctcatacttgtttttcctctgctccta
agtgcattttacagactattgaaacaccgagaacagatattttgcaatatgattggatct
gtaaactccaactccaaaatgattgagcattacaggaagaaatatcttccagtgagaaga
atgggtctgtttcatggttgtttcatttacttacatgaaatgccttttaggaataccgag
ttcaaagtaatatcagagctggccatgagaaggatgaaacttgaaattgcaatgcatggg
ggcaatgtttgtgacgatatggaacctgcgacacatttattagtctattcagtggttgga
tcacatgactttgatgagatatatgaaagcattccatcaactcagcgccatcttttacac
cagagaaagttacatgtactggtgcataattggttgcaagattccttggatagaagtgta
aagttgcccgaaaatgattataatatgaagccagattctttggaagaatacgcattcgaa
aaaaaagacaatccgacatttccagcaatcaaatgtgaagctgaagaacagaactctgcc
gcatctggaaagcgaaaaagaggaaggcgaccagcaggacaagctggtgttgttcgacca
gctcgcagacccactcgacgaagtcgtgcgaagactggaaaacattcagcaaagctgggt
tcagatgagtctgatagcattgactccatggaagtagctccaacagcatatgttaaagaa
agaggagaaactgaacaaaaatggagaaaagaagagcatgaagaacaatctgttaagact
gaaaggaatcaggaaattacagatttgcctgtagaagagtgtaattctttgaatttaatg
gatattggagataaatcaggggataaattggaggtgatgactgatccaattcatgcaatg
ctgttagacatgatacccagtcttagccaaactcagaaaaggcatggagaagttgatccc
atccgtgtggctgatgacgagaaggcggtgcaggcaagagaagagaatcaaaacccggcg
aagaagaaagtgagctacaaagatgttgcgggcgagcttctcaaagattggtaa
DBGET
integrated database retrieval system