Peptoniphilus equinus: O6R05_03440
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Entry
O6R05_03440 CDS
T09392
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pequ
Peptoniphilus equinus
Pathway
pequ03030
DNA replication
pequ03410
Base excision repair
pequ03420
Nucleotide excision repair
pequ03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pequ00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O6R05_03440 (ligA)
03410 Base excision repair
O6R05_03440 (ligA)
03420 Nucleotide excision repair
O6R05_03440 (ligA)
03430 Mismatch repair
O6R05_03440 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pequ03032
]
O6R05_03440 (ligA)
03400 DNA repair and recombination proteins [BR:
pequ03400
]
O6R05_03440 (ligA)
Enzymes [BR:
pequ01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
O6R05_03440 (ligA)
DNA replication proteins [BR:
pequ03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
O6R05_03440 (ligA)
DNA repair and recombination proteins [BR:
pequ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
O6R05_03440 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
O6R05_03440 (ligA)
MMR (mismatch excision repair)
DNA ligase
O6R05_03440 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O6R05_03440 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
DUF7501
Motif
Other DBs
NCBI-ProteinID:
WBW50613
LinkDB
All DBs
Position
698844..700802
Genome browser
AA seq
652 aa
AA seq
DB search
MTMRELVDRLNQYNYEYYTLDKPSVSDKAYDKLYQELLDLETATGEILFDSPTQRVGYKL
LEKFDKHQHSTPLYSMDKAQDFDTLLHWDQRNRELHGGPVDYVVELKFDGLTINLTYDEG
RLIVAATRGNGQVGEVITDQVRTIGSIPLSIPFQGKLEVQGEGLMPLAELEAYNLKYAEQ
LKNARNAAAGALRNLNTEETAKRHLTAYFYNIGTIEGRSFETDLEMKAFLKENRFKVSDY
YYPVHTIGEVLEKIDVIGRLRETLPILIDGVTVKVNDYELRRKLGYTNKFPRWAIAYKFE
AEEVTTILRDVVWNVGRTSKVTPTAILDPVDIGGVTVQRATLNNFDDIQRKGVALGSTVL
LRRSNDVIPEILGVVEDGAQSTPIEMPTHCPYCHSELYRDGVHFFCPNTMSCEPQLISRL
THFASRDAMDIEGLSEKTVELLLSQLDVKEVADLYRLTEDDILSLPKFKEKRSHNLLKAI
DASKDVALSNFIYALGIRGVGIKASKDLAEVYGSFDKLRGATYEDLLAVDDLGPVTAHEI
VTFFNDPVITKTLDHLFDLGIQPHHEHNDVQASFFTGKKVVLTGTLSKPRGEIKTLLEGL
GAEVVSSVSQKTDYVIAGEAAGSKRDKAEALGVTILNETDFIEKIGGSYDAG
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgcgtgagttggtagaccgactaaaccaatataactatgaatactatacctta
gataaaccttcagttagtgataaggcgtatgacaaactttatcaggagcttttagacttg
gaaactgctacgggggagattcttttcgattcgccaacccagcgtgtgggctataaactt
ctggaaaaatttgataaacatcaacatagtacgccgctttactcgatggataaggcacaa
gactttgataccttgcttcactgggatcaacgcaatcgcgagttgcatggcggaccggtg
gactatgtggttgagttgaagtttgatggtcttaccatcaatttgacttatgatgaagga
cggctcatcgtagcggctacacgaggaaatgggcaggtaggggaagtgatcaccgatcag
gtgcgtaccattggaagtattccgctttccatcccgtttcagggcaaacttgaggtgcaa
ggtgagggattgatgccccttgccgagctcgaagcctataacctaaagtatgcggagcag
cttaaaaatgctcgcaatgctgcagccggagctttgcgaaatctcaatacagaggagacc
gccaagcgtcatctgacagcctatttttacaacatcggtaccattgaaggacgaagcttt
gaaacagaccttgaaatgaaagcttttttaaaggaaaatagatttaaagtaagcgattat
tactatccggttcataccattggtgaggtgcttgaaaaaattgatgtaataggaagacta
cgagagacattacccatacttattgatggggtgacggttaaagtgaatgactatgaactc
cgtcgtaaattgggttataccaataagtttcctcgctgggccattgcgtataaatttgaa
gcggaggaagtcactacgatccttcgagatgtggtatggaatgtagggcgtacgtcaaag
gtgacgccgactgctatcttagatcctgttgatattggcggggttaccgtacaacgtgcg
acgttaaataattttgacgatattcaaagaaaaggtgtagctttagggtccacggtactg
cttcgtcggtctaacgatgtgattccggaaattctcggtgtagtagaggatggtgcacaa
agcacgcctattgaaatgccgactcattgtccctattgtcattcggagctctaccgagac
ggcgtccattttttctgtcccaatacgatgagctgtgagcctcaacttatttccaggctg
acccactttgcttcaagagatgccatggatattgaaggcttaagcgagaaaacggtagaa
ctgctactgtcacaactggatgtgaaggaagtggcggacttgtatagacttaccgaggac
gatatcttatctctgccgaagtttaaagaaaagcgttcacacaatcttcttaaggctatt
gacgcatctaaagatgtggcgctctcaaattttatttatgccttggggattcgtggcgtt
ggtattaaagcctccaaagatctggcagaggtctatggctcttttgacaaacttcgaggt
gccacgtatgaagatcttctagccgttgatgatttgggacctgtcacagctcacgagata
gtgacattctttaacgatcctgtcatcaccaaaacgttagatcatttgtttgacttaggc
attcaacctcatcatgaacataacgatgtgcaggcgtcgttctttacggggaaaaaagtg
gtgcttacagggacactgtctaagcctaggggagagattaaaactctacttgaaggtctt
ggggctgaagtggtctccagtgtgagtcaaaaaacagattatgttatcgcgggggaagct
gcgggatccaaacgtgataaggcagaagctctgggcgtgacgatattaaatgaaacagat
tttatagaaaagattggaggatcttatgacgctggatga
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