Peribacillus sp. JNUCC41: JNUCC41_11190
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Entry
JNUCC41_11190 CDS
T11068
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
perj Peribacillus sp. JNUCC41
Pathway
perj03030
DNA replication
perj03410
Base excision repair
perj03420
Nucleotide excision repair
perj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
perj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JNUCC41_11190 (ligA)
03410 Base excision repair
JNUCC41_11190 (ligA)
03420 Nucleotide excision repair
JNUCC41_11190 (ligA)
03430 Mismatch repair
JNUCC41_11190 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
perj03032
]
JNUCC41_11190 (ligA)
03400 DNA repair and recombination proteins [BR:
perj03400
]
JNUCC41_11190 (ligA)
Enzymes [BR:
perj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JNUCC41_11190 (ligA)
DNA replication proteins [BR:
perj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JNUCC41_11190 (ligA)
DNA repair and recombination proteins [BR:
perj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JNUCC41_11190 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JNUCC41_11190 (ligA)
MMR (mismatch excision repair)
DNA ligase
JNUCC41_11190 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JNUCC41_11190 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
5_3_exonuc
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QOS92150
LinkDB
All DBs
Position
2277487..2279493
Genome browser
AA seq
668 aa
AA seq
DB search
MDLQAAEKKVLELQTLLNQYSYEYYVLDQPSVPDAEYDRLLRELIEYEEKFPELQTADSP
TQRVGGAILDMFEKVEHTTPMLSLGNAFNEGDLRDFDRKVRQSVGDDFSYVCELKIDGLA
VTLQYENGFFVRGATRGDGTIGEDITANLKTIKSIPLKLREPVAIEVRGEAFMPKKSFES
LNKAKNERGEEPFANPRNAAAGSLRQLDPKLAAKRNLDIFLYAIANFGETGVRSHSEGLD
LLDRLGFKTNRERKTCSNIEEVIAYIVEWTEQRPNLAYDIDGIVVKVDSLEQQDELGFTA
KSPRWAIAYKFPAEEVITTLRDIELNVGRTGVLTPTAVLDPVRVAGTTVQRASLHNEDLI
REKDIRIGDQVVVKKAGDIIPEVVNVLAERRTGEEVEFKMPAECPECSSELVRLEGEVAL
RCINPKCPAQIREGLIHFVSRTAMNIDSLGEKVISLLFKEQLIQDVADIYKLTYDQLIAL
ERMGDKSVNKLLQAIEASKTNSLEKLLFGLGIRHVGSKAAKTLAREFGTMEALSKASRED
LTAINEIGDKMADSIVAYFELEEVHALLNELEAAGVNLTFKGPRAVAIEEIDSFFAGKTV
VLTGKLYQLTRNEAKEKLEALGANVAGSVSKKTDLVIAGEDAGSKLEKAESLGVMVWDEE
RLIEELNN
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacttacaagctgcagagaagaaagttctagaactgcaaacgttattgaaccaatac
agctatgaatattatgtactggaccagccatcagtacctgatgctgaatatgatcggcta
ctccgtgaactgattgagtatgaggagaaatttccggaactgcaaacggcggactcaccg
acacaacgggtcggtggcgccattttggatatgtttgaaaaagtagagcataccacaccg
atgcttagtttaggcaatgccttcaatgaaggtgacttacgggattttgacagaaaggtc
agacaatccgtaggtgacgatttttcctatgtatgtgaattgaaaattgatggacttgcc
gtcactcttcaatatgagaatggatttttcgtaagaggggcaactcgtggagatggaacg
atcggtgaagatattaccgctaatttgaaaacgatcaagtcgattccattgaagttgcgg
gagccggttgccatagaagtgcgcggtgaggccttcatgccaaaaaaatcattcgaatca
ttgaacaaggcaaaaaatgaacgtggtgaggaaccatttgcaaacccacgaaatgcggct
gccggttcgttaaggcagcttgacccaaaactcgctgcaaaacggaacttggatattttc
ctttatgcgattgccaattttggggaaacaggagtccgttcccacagtgagggtctggat
ttattggatcgcctcgggtttaagacgaatcgggaaagaaaaacatgctccaatatagag
gaagtaatagcttatatagtagaatggacggagcaacgtccaaacttagcctatgatatt
gatggaattgtcgttaaggtggattcccttgaacagcaggatgaattaggttttactgca
aaaagtccgcgatgggccattgcgtataaattcccagctgaagaagtcattacaacccta
agggatatcgagctgaatgtgggccgtacgggtgtattgactccgaccgccgttttggat
cccgttcgggtagcaggtacgactgtgcagcgagcttcacttcataacgaagacttaatc
cgtgaaaaggacatcagaatcggagatcaagtggttgtgaaaaaagcgggtgatatcatt
ccagaggtggtcaatgtactggcagagcgccgtacaggggaagaagtcgagtttaagatg
ccggctgagtgcccggaatgcagcagtgaacttgtccggcttgagggagaggttgcttta
cgctgcatcaacccgaagtgtcctgcacaaataagggaaggcttgattcactttgtttcc
cgtacagcaatgaatatagacagtcttggtgaaaaagtgattagcttgttgtttaaagaa
caactcatacaagatgtggctgatatttataagcttacatacgatcaactgattgctttg
gaaaggatgggggataaatccgtcaataagctccttcaagcaatcgaggcttcgaaaacc
aattcgttggaaaaattactattcggactgggcattcgccatgttggttcaaaagcggcc
aagacactagcacgtgagttcgggacgatggaagccttgagcaaggcgagccgtgaagac
ctaacggccattaatgaaataggtgataagatggccgattccatcgtagcctattttgaa
ttggaagaagtccatgcgttactcaatgaattggaagcagccggtgtgaaccttacattt
aaaggcccaagagctgttgccattgaagaaatcgattccttttttgccggtaaaacagtc
gttttaacggggaaattgtatcagttaacgcgtaacgaagcaaaagagaaattagaggcg
ctaggagccaacgttgctggaagtgtcagcaagaaaaccgatttggtcatagctggcgaa
gatgccggttccaaactggaaaaagcggaaagcctaggcgtcatggtatgggatgaagag
agactgattgaggaactaaataattaa
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