Peribacillus sp. S4: ACJ9PY_02290
Help
Entry
ACJ9PY_02290 CDS
T11198
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pers Peribacillus sp. S4
Pathway
pers03030
DNA replication
pers03410
Base excision repair
pers03420
Nucleotide excision repair
pers03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pers00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACJ9PY_02290 (ligA)
03410 Base excision repair
ACJ9PY_02290 (ligA)
03420 Nucleotide excision repair
ACJ9PY_02290 (ligA)
03430 Mismatch repair
ACJ9PY_02290 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pers03032
]
ACJ9PY_02290 (ligA)
03400 DNA repair and recombination proteins [BR:
pers03400
]
ACJ9PY_02290 (ligA)
Enzymes [BR:
pers01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACJ9PY_02290 (ligA)
DNA replication proteins [BR:
pers03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACJ9PY_02290 (ligA)
DNA repair and recombination proteins [BR:
pers03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACJ9PY_02290 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACJ9PY_02290 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACJ9PY_02290 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACJ9PY_02290 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH_3
Motif
Other DBs
NCBI-ProteinID:
XMN25846
LinkDB
All DBs
Position
475653..477659
Genome browser
AA seq
668 aa
AA seq
DB search
MDIQAAEKKVLELQTLLNQYSYEYYVMDQPSVPDAEYDRLLRELIGYEEKFPELQTADSP
TQRVGGAILDMFEKVEHTTPMLSLGNAFNESDLRDFDRKVRQSVGDDFSYVCELKIDGLA
VTLQYENGYFVRGATRGDGTIGEDITANLKTIKSIPLKLREPVAIEVRGEAFMPKKSFES
LNKAKEERGEEPFANPRNAAAGSLRQLDPKLAAKRNLDIFLYAIADLGETGVRSHSEGLD
LLDRLGFKTNRERKTCSNIEEVLAYIVEWTEQRPNLAYDIDGIVVKVDSLEQQDELGFTA
KSPRWAIAYKFPAEEVITTLRDIELNVGRTGVLTPTAVLDPVRVAGTTVQRASLHNEDLI
REKDIRIGDQVVVKKAGDIIPEVVNVLAERRTGEEVEFQMPTECPECSSELVRLDGEVAL
RCINPKCPAQIREGLIHFVSRTAMNIDSLGEKVISLLFKEELIQDVADIYKLTYDQLIAL
ERMGDKSVTKLLQAIEASKTNSLEKLLFGLGIRHVGSKAAKTLAREFGTMEALSKASREE
LTAINEIGDKMADSIVAYFELEEVHALLNELDAAGVNLTFKGQRAVALEDIDSFFAGKTV
VLTGKLHQLTRNEAKEKLEALGANVAGSVSKKTDLVVAGEDAGSKLEKAESLGVMVWDEE
RLIEELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacatacaagctgcagagaagaaagttctggaactgcaaacgttattgaaccaatac
agctatgaatattatgtgatggaccagccatcagtacctgatgctgaatatgatcggctg
ctacgtgaacttattgggtatgaggagaaatttccggaactgcaaacggcggactcgccg
acacaacgggtcggtggcgccattttggatatgtttgaaaaggtggagcataccacaccg
atgcttagtttaggcaatgccttcaacgaaagtgacttgcgggatttcgacagaaaggtc
agacaatctgtaggtgacgatttttcctatgtatgtgaattgaaaattgacggacttgcc
gtcacacttcaatatgagaatggatatttcgtaagaggggcaacccgtggagacggaacg
atcggtgaagatattaccgccaatttgaaaacgatcaagtcgatcccattgaagctgcgg
gagccagttgccatagaagtgcgcggtgaggcattcatgccaaaaaaatcattcgaatca
ttaaacaaggctaaggaagaacgcggtgaggaaccatttgccaacccgcgaaatgccgct
gccggctcgttaaggcagcttgatccgaaacttgctgcgaaacggaacttggatattttc
ctttatgcgattgccgatttgggggaaacgggggtccgttcccatagcgagggtctggat
ttattggatagactcgggtttaagacgaaccgggaaagaaaaacatgctcgaatatagag
gaagtactggcctatatagtagaatggacggaacaacgtccaaacttagcctatgatatt
gatggaattgtcgtaaaggtggattcccttgaacagcaggatgaattaggttttactgca
aaaagtccgcgatgggccattgcttataaattcccagctgaagaagtcattacaacccta
agggatatcgagctgaatgtgggccgtacgggtgtattgaccccgactgccgttttggat
cccgtccgggtagcaggtacgactgtgcagcgagcttcacttcacaatgaagacttaatc
cgtgaaaaggacatcagaatcggagatcaagtggttgtgaaaaaagcgggtgatatcatt
ccagaggtagtcaatgtactggcagagcgccgtacaggggaagaagtcgagtttcagatg
ccgactgagtgccctgagtgcagcagtgaacttgtccggctggacggggaggttgcttta
cgctgcatcaacccgaagtgtcctgcacaaatacgggaaggtttgattcactttgtttcc
cgtacagctatgaatatagacagtcttggtgaaaaagtgattagcttgttatttaaagaa
gaactcatacaagatgtggctgatatttataagcttacatacgatcaactgattgctttg
gaaaggatgggggataaatccgtcactaaacttcttcaagcaatcgaagcttcgaagacc
aactcgttggaaaaattactattcgggctgggcattcgccatgttggttccaaagctgcc
aagacgcttgcgagggaattcgggacgatggaagccttaagcaaggcgagccgtgaagaa
ctaacggccattaatgaaataggcgataagatggctgattccatcgtagcttattttgaa
ttggaagaagtccatgcattattgaatgagctggatgcagccggtgtgaatcttactttc
aaagggcaaagagctgttgctttagaagatatcgactctttttttgccggtaaaacagtc
gttttaacgggaaaactgcatcagttaacacgtaacgaagctaaagagaaattagaggcg
ctaggagctaacgttgctggaagtgtcagcaagaaaaccgatttggtcgtagctggtgaa
gatgccggttccaaactggaaaaagccgaaagcctaggcgtcatggtatgggatgaagag
agactgattgaggaactaaataaataa
DBGET
integrated database retrieval system
