Candidatus Sodalis pierantonii: SOPEG_2942
Help
Entry
SOPEG_2942 CDS
T03006
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pes
Candidatus Sodalis pierantonii
Pathway
pes03030
DNA replication
pes03410
Base excision repair
pes03420
Nucleotide excision repair
pes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SOPEG_2942 (ligA)
03410 Base excision repair
SOPEG_2942 (ligA)
03420 Nucleotide excision repair
SOPEG_2942 (ligA)
03430 Mismatch repair
SOPEG_2942 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pes03032
]
SOPEG_2942 (ligA)
03400 DNA repair and recombination proteins [BR:
pes03400
]
SOPEG_2942 (ligA)
Enzymes [BR:
pes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SOPEG_2942 (ligA)
DNA replication proteins [BR:
pes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SOPEG_2942 (ligA)
DNA repair and recombination proteins [BR:
pes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SOPEG_2942 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SOPEG_2942 (ligA)
MMR (mismatch excision repair)
DNA ligase
SOPEG_2942 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SOPEG_2942 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
Zn_ribbon_NUD
HHH
Motif
Other DBs
NCBI-ProteinID:
AHF74460
UniProt:
W0HQJ8
LinkDB
All DBs
Position
complement(3157011..3159035)
Genome browser
AA seq
674 aa
AA seq
DB search
MEQIEQQILRLREQLRHWEYLYYVESAPEVPDSEYDRVMAELRELEAKRPDLLTADSPSQ
RVGGQAQNSFGQVRHEVPMLSLDNVFEEPGFLAFDKRVRDRIKRDDDMTYCCELKLDGLA
VSLLYENGELVRAATRGDGTTGEDITANVRTIRTIPLRLKDNGDLPRLLEIRGEVFMSEA
GFQRLNETAKREGGKVFANPRNAAAGSLRQLDPAITAKRPLTFYCYGVGLLEDGALPESH
WERLQQFKAWGVPVSDRVRRCTGSAAVRAFYQQVHEARATLGFDIDGVVIKVDSLALQQR
LGFVARAPRWAIAYKFPAQEQLTRVRDVEFQVGRTGAITPVARLETVLVFGAMVSNATLH
NADEVERLGLMIGDTVIIRRAGDVIPQIVGVVASERPEDARPVAFPSHCPVCGSDVERVE
GEAVLRCTAGLVCAAQRKEALKHFVSRRAMDIDGMGDKIIDQLVERELVKTPADLFRLTK
ENLTRLERMGLKSAQNLLEALENAKQTTFARFLYALGIREVGEATAANLAAAYGTLDALT
AADIDSLTGVQDIGKIVATHVRHFFEESHNLEVIRELLSPTIGIHWPAPVAASVAAGDNP
FAGKTIVLTGSLSTLSRDKAKDRLVALGARVSGSVSAKTDLLIAGEAAGSKLSKAQQLNI
PIMDEAEMMRLLGD
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaacagatagaacaacagatcctgcggctgcgtgagcagttgcgacattgggaatac
ctctattacgtggaatccgcccctgaagtgcccgatagcgaatatgaccgggtcatggcg
gaactgcgtgagctggaggctaaacggccggacctgctgaccgccgattctcccagccag
cgcgttggtgggcaggcgcagaatagcttcggccaagtgcgccatgaagtgccgatgctt
tcgctggataacgtttttgaagagcccggtttcttggcgttcgacaaacgggtgcgggac
aggattaagcgcgatgacgatatgacctactgctgcgaactcaaactggacggtctggcg
gttagcctgttgtatgaaaacggcgagctggtgcgggccgccacccgcggcgacggcacc
accggcgaggatatcaccgccaatgtgcgcaccattcgcaccattccgctgcgtttaaaa
gataacggcgacctgccgcgtctgctggagatccgcggcgaagtgtttatgtcggaagcg
ggctttcagcggctgaatgaaaccgccaaacgggaagggggcaaagttttcgccaatccg
cgcaacgccgccgccggctccttgcgccaactggatcccgccatcaccgccaagcggccg
ctgacgttttattgttacggcgtcggcctgctggaagacggcgcgctgccggaaagtcat
tgggagcggttgcagcagtttaaagcctggggcgtaccggtcagcgatcgcgtccgccgc
tgcaccggcagcgccgcggtgcgggcgttctatcaacaggtgcacgaggcgcgcgcgacg
ctcggctttgatatcgatggcgtggttattaaagtggattcgctggctctacagcagcgc
ttggggtttgtcgcccgcgcgccgcgctgggccatcgcctataagtttccggcccaggag
cagttaacccgggtgcgggacgtggagttccaggtgggacgtaccggtgccatcactccg
gtggcgcggcttgagacggtgctggtgtttggcgccatggtcagcaatgccactctgcac
aacgccgatgaggtcgagcggctgggactgatgattggcgatacggtgattatccgccgc
gccggcgatgtcatcccgcagatcgtcggtgttgtcgcctccgaacggcctgaggatgcg
cggccggtggcgtttccgtcccattgcccggtctgcggctcggatgtggagcgcgttgag
ggcgaggcggtgttacgctgcaccgcgggcctggtctgtgccgcgcaacgaaaggaagcg
ctgaaacatttcgtttctcgtcgggcgatggacatcgacggcatgggggataagattatc
gatcaactggtggagcgtgagctggtgaaaacgccggccgatttgttccgactgacgaaa
gagaacctgacccggctcgagcgaatggggctgaaatcggcgcaaaatttgctggaagcg
ctggagaacgccaaacagaccaccttcgcgcgttttctctacgcgctcgggatccgcgag
gtgggcgaggcgacggcggcaaatctggctgccgcttatggtacgctggacgcgctgaca
gccgcagatattgactcgctgactggggtgcaggacatcggcaagattgtggcaacccac
gtgcgccactttttcgaggaaagccataatcttgaggtcattagagagttgctgagcccg
acgataggcatccattggccggcgcctgtggccgcatccgtcgcggcgggggataacccg
tttgccggtaagaccattgtgctgaccggatcgctcagcaccctgtcgcgggataaggcc
aaagatcggctcgtagccctcggcgctcgggtcagcggcagcgtttccgccaagaccgat
ctgctgatcgcgggggaggcggccggttctaaactgtccaaggctcagcagttaaatatt
ccgatcatggatgaggcggaaatgatgcgtcttttgggggactaa
DBGET
integrated database retrieval system
