Peribacillus sedimenti: V1500_02360
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Entry
V1500_02360 CDS
T11238
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pesi Peribacillus sedimenti
Pathway
pesi03030
DNA replication
pesi03410
Base excision repair
pesi03420
Nucleotide excision repair
pesi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pesi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V1500_02360 (ligA)
03410 Base excision repair
V1500_02360 (ligA)
03420 Nucleotide excision repair
V1500_02360 (ligA)
03430 Mismatch repair
V1500_02360 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pesi03032
]
V1500_02360 (ligA)
03400 DNA repair and recombination proteins [BR:
pesi03400
]
V1500_02360 (ligA)
Enzymes [BR:
pesi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V1500_02360 (ligA)
DNA replication proteins [BR:
pesi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V1500_02360 (ligA)
DNA repair and recombination proteins [BR:
pesi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V1500_02360 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V1500_02360 (ligA)
MMR (mismatch excision repair)
DNA ligase
V1500_02360 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V1500_02360 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_pol_A_CTD
HHH_8
PG_binding_1
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
XNY94611
LinkDB
All DBs
Position
440024..442030
Genome browser
AA seq
668 aa
AA seq
DB search
MDVQMAEKRVKDLQNLLNQYGYEYYVLDQPSVPDAEYDQLIRELIELEENYPQFRSPDSP
TQRVGGAILEMFEKVEHRTPMLSLGNAFNEADLRDFDRKVRQAVGEDYAYVCELKIDGLA
VTLSYENGYFVQGATRGDGTTGEDITENLKTIKSIPLRIKEPISIEVRGEAFMPRRSFEA
LNKAKEERGEEPFANPRNAAAGSLRQLDPKLAAKRNLDIFLYAVADLGGMDVTAHSEALD
LLDRLGFKTNKERRKCATIDEVLAYIEAWVEMRPNLSYDIDGIVVKVDSLEQQQRLGFTA
KSPRWAIAYKFPAEEVVTTLRDIELNIGRTGVVTPTAILDPVRVAGTTVQRATLHNEDLI
REKDIKIGDRVVVKKAGDIIPEVVNVLADQRTGDELDFHMPTHCPECESELIRLDGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFSEHLIKDVADIYKLTEDQLLAL
ERMGKKSVSNLLEAIEASKGNSLERLLFGLGIRHVGSKAARTLAQQFENLYALQKATRED
LTAINEIGDKMADSIVSFFEMEEAKELIAELEAAGVNFDYKGPKPVSVESSDSFFAGKTI
VLTGKLEQLTRNDAKERLEALGANVAGSVSKKTDLVIAGEDAGSKLDKAQSLGIEVWDEE
RLVQELKI
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacgttcaaatggctgagaagcgtgttaaggatttgcaaaaccttttaaatcaatat
ggatatgagtattatgttctggaccagccctctgtgccggatgcagaatacgatcagctc
ataagagagctgattgaactagaggagaattatccgcagttccgctcgcctgattcgccg
acacagcgcgtgggcggagctattctcgagatgtttgaaaaagtggagcacaggacgccg
atgctcagtcttggaaatgcctttaatgaagcggatttgcgggattttgaccggaaggtg
cgtcaggcggttggcgaagattacgcctatgtctgtgaattgaaaatagatgggctggct
gtgacgctgtcctacgagaacggctattttgtccagggtgcgactcgcggtgacggtaca
accggagaagatattaccgaaaacttaaagaccattaagtcgattccgttaaggattaag
gaacctatcagcatcgaggttcgcggtgaagccttcatgccgaggcggtcattcgaggcg
cttaataaggcaaaggaagaacgcggtgaagagccatttgccaatccgcggaatgcagcg
gcggggtctttgcgccagctggatccgaaacttgcggcaaagaggaatcttgatattttc
ctttatgcggtggctgaccttggcgggatggatgtcactgcccacagtgaagcgcttgac
cttttagaccggctgggtttcaagacaaacaaggaaagacggaaatgcgccactattgat
gaagtgctggcttatatagaggcctgggtggaaatgcgccctaatttgtcatatgatatc
gacgggatcgtcgtaaaggtcgattcacttgaacagcagcagcggctgggattcacagct
aagagcccacgctgggccattgcatacaaattccctgcggaagaagttgtcactacatta
agagacatcgagttaaacataggccgtacaggcgttgtaacgccgacagcgattctcgat
ccggtacgtgttgcaggtacgactgtccagcgtgccacattgcataatgaggatttaatc
cgcgaaaaagatataaaaatcggtgaccgggttgtcgtgaaaaaggcgggagacattatc
ccggaggtcgtaaatgtccttgccgaccagcgaaccggggacgaactggacttccatatg
cctacccattgccctgaatgcgagagtgaacttataaggctggatggcgaggtggcactc
cgctgtattaatccgaaatgccctgctcaaataagggaaggcctgatacactttgtttcc
cgcaatgcaatgaatattgacgggcttggcgagaaggttatcagccaattattcagtgaa
cacttgataaaagatgtagccgatatctataaattgacagaggatcagcttcttgcgctg
gaacgtatggggaaaaaatcagtcagcaatcttttggaggcgattgaagcatctaaaggc
aattcccttgaaaggcttctattcgggcttggcatccgccatgtgggttcaaaggctgcc
aggacattggcacagcaatttgaaaacctttatgcactgcaaaaagctacacgcgaagat
ttgactgccattaatgaaattggggataaaatggctgattcgattgtgtccttttttgaa
atggaagaggctaaggagttgattgccgagctggaagcagcgggagtcaatttcgattat
aaagggcctaagccagtatcagtggaaagctcagattcattctttgccggtaaaacgatc
gtgctgacaggaaagctggagcagctgaccagaaatgatgccaaggaaagactggaggct
ttgggtgccaatgtagccggaagcgtcagcaagaaaacggaccttgtcatcgccggggaa
gacgcaggttcgaagctggataaagcacagagcctgggaattgaagtatgggacgaggag
agacttgtacaagaattaaagatatag
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