Petroclostridium sp. X23: QKW49_00365
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Entry
QKW49_00365 CDS
T09049
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
petr
Petroclostridium sp. X23
Pathway
petr03030
DNA replication
petr03410
Base excision repair
petr03420
Nucleotide excision repair
petr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
petr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QKW49_00365 (ligA)
03410 Base excision repair
QKW49_00365 (ligA)
03420 Nucleotide excision repair
QKW49_00365 (ligA)
03430 Mismatch repair
QKW49_00365 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
petr03032
]
QKW49_00365 (ligA)
03400 DNA repair and recombination proteins [BR:
petr03400
]
QKW49_00365 (ligA)
Enzymes [BR:
petr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QKW49_00365 (ligA)
DNA replication proteins [BR:
petr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QKW49_00365 (ligA)
DNA repair and recombination proteins [BR:
petr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QKW49_00365 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QKW49_00365 (ligA)
MMR (mismatch excision repair)
DNA ligase
QKW49_00365 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QKW49_00365 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
RNA_ligase
MTR4_beta-barrel
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
WHH59257
LinkDB
All DBs
Position
71251..73248
Genome browser
AA seq
665 aa
AA seq
DB search
MNLELVTKRIEELRKKIEYHNHKYYVEDQPEINDFEYDKMLRELEKLEQQYPQLVTSDSP
TQRVGGKPIEGFETVVHQIPMQSLSDVFDEQELFDFDNRVRTAIAPQQVEYVVELKIDGL
SVSLEYENGVFVRGSTRGDGIVGEDVTQNLRTIKSIPLRLKESIPFLEVRGEVFISRDNF
IKLNEQREALEEPVFANPRNAAAGSLRQLDPKVTVGRKLDIYIFNIQQVQGAELETHTET
LEYLKHQSFKVSPTYNVFHDIAQVHQEIVRLGEERGTLPFEIDGAVVKVNSLRQREMLGS
TSKSPRWAAAYKFPAEKKETVIKDIFVQVGRTGALTPNAVLEPVRLAGSTVSRATLHNID
YIRQKDIRIGDTVIVQKAGDIIPEVVEVVIDKRNGDEKEFSMPEQCPECGAPVTREEGEA
VTRCTGIECPAQLLRNIIHFASRDAMNIDGLGPAIIEQLLEKGLIKGAADLYYLNFEDLV
NMERMGKKSAQNLLDAIEKTKDSDLSRLIFAFGIRLIGQRAAKLLADHFGSLDGLKEASV
EQISSIHEIGDKMAQSAVNFFMQEQSIDTIEKLKAAGVNMESKNKKERKDNRFEGFTFVL
TGTLSKYNRSQATEIIENYGGKVSGSVSKKTTYVLAGEEAGSKLDKAAKLGVKVISEQGF
EEMTK
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaacttggaattagtaacaaaaagaatagaagaattgagaaaaaagattgagtatcat
aaccataaatattatgtagaagatcaaccggagatcaacgattttgaatacgataaaatg
cttagggagctagagaaattggaacagcagtatccacagctggtcacttccgattctcct
acacaacgtgttggcggaaagcctattgaggggtttgaaactgtagtacatcagattcct
atgcagagcttatccgatgtttttgatgaacaggaattgtttgattttgataatagggtt
cggacagccattgcgcctcagcaagtagaatacgtggtcgagctaaagattgacggctta
tccgtatcattggaatatgaaaatggtgtttttgtcagagggtccacacgaggagacggt
atagttggtgaagatgttacccagaatttgaggaccattaagtccatacctctcagacta
aaagaaagcatcccatttcttgaagtaagaggtgaagtgtttatctccagggataatttt
atcaaattgaatgaacaaagggaagctctagaggagccggtattcgcaaatccccgaaat
gctgctgccggttctcttaggcagcttgatccaaaggttaccgtaggaagaaagctggat
atttatatttttaatattcaacaggtgcaaggggctgaattggagacccataccgaaacc
cttgaatatctaaaacaccagagctttaaggtgagtcctacatataacgtatttcatgat
atcgcgcaagttcatcaggagatagtgcggcttggtgaagaacggggaacacttcctttt
gaaattgacggtgcggtggtaaaggtaaattcactgcgtcagagagaaatgttgggaagt
acttccaagagccctcgatgggcagcagcgtacaaattcccggcagaaaaaaaagaaacg
gtgataaaagatatttttgtgcaagtgggaaggaccggtgcgttaacacctaatgctgtc
cttgaaccggtgcggttggcaggaagtactgtaagcagagctaccttgcacaatattgac
tatattcgtcagaaagatatccgcataggagatacagtcattgtgcagaaggcgggagat
attattcctgaagtggttgaagtggtcatcgacaaacggaacggcgacgaaaaagagttc
agcatgcctgaacaatgtccggaatgcggtgccccggtaacgagagaagagggagaggcg
gttacgcggtgtaccggtatcgaatgtcctgcgcaattattgaggaatatcatacatttt
gcatcaagagacgctatgaatattgacggattagggccggcgatcattgaacagttgttg
gaaaagggcttgataaaaggtgctgccgatctttattatctgaatttcgaagatttggtc
aatatggagaggatggggaaaaaatcggcgcaaaacctattggatgcgatagaaaaaaca
aaagatagtgatttgagccgattgatttttgcttttggtatcaggttgattggacagaga
gccgctaagttgctggcagatcattttggttctttagatggattaaaagaggcaagtgta
gaacagattagttccattcatgaaattggcgataaaatggcacaaagtgctgtcaatttc
tttatgcaggaacagagtatagataccattgaaaagctgaaagcagccggagtaaatatg
gaaagcaagaacaaaaaagaaagaaaggataatcgttttgaaggatttactttcgtcctc
accggaacattatccaaatacaaccgcagccaagctacggagatcatcgagaattatggc
ggtaaagtttcgggaagcgtatctaaaaaaactacttatgtattggcaggagaagaagcc
ggcagtaaattggataaagcggcgaaattgggcgtaaaggtcattagtgaacaggggttt
gaggaaatgacaaagtag
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