Populus euphratica (Euphrates poplar): 105110438
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Entry
105110438 CDS
T05872
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
105110438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105110438
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
105110438
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
105110438
NCBI-ProteinID:
XP_011003775
UniProt:
A0AAJ6T4D4
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MGVPAFYRLLADRYPLSISDVIEEEPQEDSNGNSKPIDVSKPNPNGIEFDNLYLDMNGII
HPCFHPEGKPAPATYDDVFKSIFAYIDHLFALVRPRKLLFMAIDGVAPRAKMNQQRSRRF
RAAKDAAQAEAEEERLRKEFEAEGELLSVKEKRETFDSNVITPGTQFMAALSTALQYYIQ
SRLNHNLGWQNTKVILSDSNVPGEGEHKIMSYIRLQRNLSGFNPNTRHCLYSLDADLIML
SLATHEVHFSILREIVTLPGQQDKCFLCGQAGHLAAECHGKQGDDALDWHVVDDTPIHKK
KYQFLNIWVLREYLQYDLDILNPPFAIDFERIVDDFVFMCFFVGNDFLPHMPTLEIREGA
ISLLMHIYRREFFAMGGYLTLAGEVFLDKVEHFIQCVAVYEEQIFQKRTRIQQAFDNNEE
MKLKARSESSEVIQTPVVDKVKLGEPGYKERYYAEKFELSKQEEIAKVRKEVVLKYVQGL
CWVCRYYLQGVCSWQWFYPFHYAPFASDLKDLGEVELNFFIGEPFKPFDQLMGTLPAASS
NALPKEYRKLMTNPSSPIHRFFPSDFEIDMNGKRFAWQGIAKLPFIDERKLLAQTKKLES
TLTEEEQIRNRVMHDLLYIHPVHPLAQQVISYYQQNDHLSVGERFAWEIDTRASGGMNGC
LWLYERNVRRSVVPSPILGLPALEGNQVLNITFLNPKCRGHIPEIPEGAVMPEKIVKPVD
LKPFPTLWHEDNGRRQQGRERPQVHRATAGPSLGDAAHRLVKNTLNIKPNGSSSRVFDQQ
LYHNVPGNYTFYRPVPAGPAGYGRGYRDDPNYHYAQRSNQQGLMSNPRHRSLSNGVQSNP
HNFRTQDRVQYHQQYHNLSTGVSALTIEENIKSRAPAVISPRLPNPGNTPNLQNQAEQNT
GLLPSPPTNWINKTAAGNTGMYFKRESTSMGPNEKQVKQVYQVKTHIAQETMGPNEKQVK
QVYQVKTQVAQETPDIQAQGTPDLKHQ
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccggcattctacaggcttctcgcagaccgatacccgctatcaatttcggat
gtgatcgaagaggaacctcaagaggattcgaatggaaactccaaaccaatcgatgtttca
aagcctaaccctaacggtattgagtttgacaatctgtatttggatatgaacgggattatc
catccctgcttccaccctgaaggcaagcctgcacctgctacttatgatgatgtgttcaag
tccatatttgcttacattgatcacttgtttgctttggttcgtccaaggaaactacttttt
atggcaattgatggggttgctcctagagctaaaatgaaccagcaacggtcgcgacggttt
agagctgcaaaagatgctgctcaagcagaagctgaagaagaaagattgaggaaagaattt
gaggctgagggggagcttttatccgttaaagaaaagcgtgaaacatttgattctaatgtt
atcactcccggcactcaatttatggctgctctatcgactgcgcttcagtattatatacaa
agtagattgaatcacaatctgggctggcagaataccaaggttattctttctgattcaaat
gttcctggtgagggagagcacaaaatcatgtcttatataagattgcaacgcaacctttcc
ggtttcaatccaaacacacgccattgtctgtatagcctggatgcagatttgattatgctg
tctttagccacgcatgaggttcacttttccatattaagagagatagttacacttcccggg
cagcaggataaatgttttctctgcggtcaagctggtcatcttgcagctgaatgtcatggc
aagcaaggagatgatgctttagattggcatgtggtagatgataccccaattcacaagaag
aaatatcagttcctcaacatctgggtgctgcgagaatatttgcaatatgatctggacatt
ctgaacccaccatttgctattgactttgaacggatagtggatgactttgtgttcatgtgt
ttttttgttggcaatgacttccttccgcatatgccaacattggaaattagggagggtgct
ataagcttactgatgcatatttatagaagggagttctttgcaatgggtggttatcttact
cttgcgggtgaggttttcctagataaagtagaacactttattcagtgtgttgctgtttat
gaggagcagatctttcagaagaggactcgtatacaacaggctttcgataataatgaagag
atgaaactcaaagcaagaagcgagtcctctgaagtgatacaaacaccagttgtagataag
gttaaattaggggaacctggatacaaagagagatactatgctgagaaatttgagttgtca
aaacaagaggagattgccaaagttagaaaggaagtggtattgaagtatgtgcaaggtttg
tgttgggtctgtcgttattacttgcaaggtgtttgctcttggcaatggttttatccgttc
cactatgctccatttgcttcagatcttaaggatctgggtgaggtggaattgaactttttt
attggagagccattcaaaccctttgatcaacttatgggaaccctaccagctgcaagttct
aatgctttgccaaaagaatacaggaaattgatgaccaatccatcttcaccaattcataga
ttctttccctcagattttgaaattgacatgaatggcaagcgctttgcttggcagggtatt
gccaaattgccattcattgatgagaggaaattgcttgcccagacaaagaagcttgaaagc
actctaacggaggaagagcagatcaggaatagagtgatgcatgatttgctatatattcat
cctgttcatccattagctcaacaagttatttcatactatcaacagaacgatcatttatct
gtaggtgaaagatttgcgtgggaaattgacacaagagccagtggggggatgaatggttgt
ctttggttatatgagagaaatgtgcggagaagtgtggtcccgtctcctatacttggattg
ccagccttagagggtaaccaagttttaaatatcacatttctaaatcctaaatgccgtgga
cacatcccagaaattcctgagggtgcagtcatgcctgaaaagatcgtaaaacctgtagat
cttaaaccattccccacattatggcatgaagataatggccggagacagcaaggcagggaa
aggccacaagtacaccgagcaacagctggcccctccctgggggatgcagctcatcgtctt
gtcaagaacactcttaatatcaaaccaaatggttcatcctctagagtgtttgaccagcaa
ctatatcataatgtccccggcaattacacattctacagaccagtaccagctggaccagct
ggttatggaaggggctatagggatgatccaaactatcattatgcacagcgcagtaaccag
caaggcctgatgagtaatcctaggcatcgatctttgtcaaatggtgtgcaaagcaaccca
cacaactttaggactcaagacagagtacagtaccatcaacagtatcataacttgagtact
ggggtgtctgctctgaccatagaagaaaatatcaaaagcagggcacctgcagtgatctca
cctcgattgccgaatccaggaaacactccgaacttacaaaatcaggccgagcagaacaca
ggtctacttccatcaccacccaccaattggatcaacaaaacagctgcaggaaacactgga
atgtacttcaaacgagaatcaacttcgatgggtccaaatgagaagcaggtgaagcaggtt
tatcaggttaagacacacatagctcaggagacgatgggtccaaatgagaagcaggtgaag
caggtttatcaggttaagacacaagtagctcaggagacaccagatattcaagctcagggg
acgccagatttaaaacatcagtaa
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