Pedobacter sp. D749: KYH19_01920
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Entry
KYH19_01920 CDS
T10701
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pev Pedobacter sp. D749
Pathway
pev03030
DNA replication
pev03410
Base excision repair
pev03420
Nucleotide excision repair
pev03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KYH19_01920 (ligA)
03410 Base excision repair
KYH19_01920 (ligA)
03420 Nucleotide excision repair
KYH19_01920 (ligA)
03430 Mismatch repair
KYH19_01920 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pev03032
]
KYH19_01920 (ligA)
03400 DNA repair and recombination proteins [BR:
pev03400
]
KYH19_01920 (ligA)
Enzymes [BR:
pev01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KYH19_01920 (ligA)
DNA replication proteins [BR:
pev03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KYH19_01920 (ligA)
DNA repair and recombination proteins [BR:
pev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KYH19_01920 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KYH19_01920 (ligA)
MMR (mismatch excision repair)
DNA ligase
KYH19_01920 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KYH19_01920 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
HHH
Nlig-Ia
RNA_ligase
RNA_pol_A_CTD
HHH_3
Dna2
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
QXU42383
LinkDB
All DBs
Position
complement(477466..479481)
Genome browser
AA seq
671 aa
AA seq
DB search
MSLTAIKEEMDALVAELNQHNYNYYVLAMPTIGDYEFDKKLKHLAGLEKANPDFADPNSP
TQRVGGDITKNFVTVNHKYPMLSLGNTYNEQDLRDFDERIRKAIGDNFEYVCELKFDGLS
ISLTYENGKLLRAVTRGDGTKGDDVTNNVKTIHTIPHQIKSTAAPEHFEIRGEIFMHKAA
FLRLNAAREELGEIPYANPRNFASGTIKMQDSKEVAKRPLDGFIYFLYTDKNEFKTHWES
LNAVKDWGFHVCEHNRLVSNIDAVLEFIHHWENERFKLSYDIDGIVIKVNSYAQQQELGF
TSKSPRWAISYKYKAAEVETVLAKVTYQVGRTGAVTPVANLKPVLLAGTTVKRATLHNAN
EIERLDLHEGDTVYVEKGGEIIPKIIKVNLDKRLPGAKRVHYLHNCPECGTELIRREGEA
VHYCLNDEGCPPQIVGKIQHFISRKAMNIDGLGDETIETFYKRGLVNHISDLYTLYEKSD
ELKTLDRFGERSIENMLAGIEKSKEMPFEKVLFGLGIRYVGETVAKKLAAGIKNIDNLAK
ATVEDLIAIDEIGQRIAESIVEYFGKSEHLQQVELLKLAGLQFEIEEKVITLDSDRLIGK
TFVISGVFENFSRDELKDMIEANGGKMLSGISGKLNYLVAGDNMGPSKLEKANKLNVPII
TDAELLEMING
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctaactgcaataaaagaagaaatggatgccctggtggccgaattaaaccagcac
aattataactattacgtgctggctatgcctaccattggcgattatgaatttgataaaaaa
ttaaaacatcttgccgggctcgaaaaagcaaatcctgactttgccgatccaaattcgcct
acgcagcgtgttggtggcgatatcaccaaaaattttgttacggtaaatcataaatacccg
atgttatcactggggaatacctataacgaacaggatctccgggattttgatgaacgtatc
cgtaaagcaattggcgataattttgaatacgtttgcgaattaaaatttgatggcttatct
attagtcttacttacgaaaatggcaaacttttacgtgcggttacccgtggtgatggcacc
aaaggtgatgatgtaactaataatgtaaaaaccattcataccatcccacatcaaatcaaa
tcaactgccgcacctgaacatttcgaaatccgtggcgagattttcatgcacaaagcggcc
tttttacgcttaaatgcagcacgtgaggagctgggagaaatcccttacgcaaacccccgt
aactttgcatctggcactataaaaatgcaagacagcaaggaagtagctaaacggccatta
gacggttttatttatttcctgtatacagataaaaatgaatttaaaacccattgggaaagt
ttaaatgccgtaaaagactggggttttcatgtttgcgaacataaccgcctggtttctaat
atcgatgcagttctggaatttattcaccattgggaaaacgaacgttttaaactaagttac
gatattgatggtattgtaattaaggtaaatagttatgcgcaacaacaggaattgggtttc
acttccaaatctccacgctgggccatttcatataaatataaagcagcagaggttgaaact
gttttagcaaaggtaacctatcaggtgggtagaaccggagcagttacgccggttgccaat
ttaaagcctgttttattggctggtactacggttaaacgtgctacactacataacgcaaac
gaaatagagcgtttagatttacatgaaggcgatactgtgtatgtagaaaaaggtggtgaa
attattccgaaaattattaaggtaaatttagataagcgcttgcctggtgctaaaagggtt
cattatttacacaactgccccgaatgtggaacagaattaatcaggagagaaggagaagca
gttcattattgccttaacgatgaaggttgccctccacagatagtgggaaaaattcagcat
tttatttcccgcaaggccatgaatatagacggacttggagatgaaaccatcgaaaccttt
tacaaacggggcttagtaaaccacattagtgatttatataccttatacgagaaatcagat
gaacttaaaaccctggatcgtttcggcgaacgttctattgaaaacatgcttgcaggcatt
gaaaaatcaaaagaaatgcctttcgaaaaagtgctttttggcttgggcatccgttacgtt
ggcgaaacagtagcaaagaaactggccgccggaattaagaatatagataatttggccaag
gcaactgtagaggatttaattgctattgatgaaattggacagcgaatagcagagagtatt
gttgaatattttggaaaatctgagcacttacagcaggtagaattattaaaattagcagga
ttacagtttgaaattgaagaaaaagtaataacgctggacagtgatagacttattggaaaa
acattcgtaatttcgggcgtttttgaaaactttagccgcgatgagctaaaagatatgatt
gaggccaacggaggcaagatgctgagcggcatttcgggcaaattgaattatctggtagcg
ggcgacaatatggggccatcgaaactggaaaaagcgaataagctaaacgtcccaatcatc
accgatgccgaacttttagaaatgataaatggttaa
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integrated database retrieval system
