Pedobacter endophyticus: IZT61_07565
Help
Entry
IZT61_07565 CDS
T07452
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pex
Pedobacter endophyticus
Pathway
pex03030
DNA replication
pex03410
Base excision repair
pex03420
Nucleotide excision repair
pex03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IZT61_07565 (ligA)
03410 Base excision repair
IZT61_07565 (ligA)
03420 Nucleotide excision repair
IZT61_07565 (ligA)
03430 Mismatch repair
IZT61_07565 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pex03032
]
IZT61_07565 (ligA)
03400 DNA repair and recombination proteins [BR:
pex03400
]
IZT61_07565 (ligA)
Enzymes [BR:
pex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IZT61_07565 (ligA)
DNA replication proteins [BR:
pex03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IZT61_07565 (ligA)
DNA repair and recombination proteins [BR:
pex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IZT61_07565 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IZT61_07565 (ligA)
MMR (mismatch excision repair)
DNA ligase
IZT61_07565 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IZT61_07565 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
RNA_ligase
HHH
Dna2
HHH_3
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QPH41109
UniProt:
A0A7S9L240
LinkDB
All DBs
Position
1898339..1900351
Genome browser
AA seq
670 aa
AA seq
DB search
MALFAIKEEMDALVAELNQHNYNYYVLAMPTIGDYEFDKKLKRLADLEKAHPELADPNSP
TQRVGGDITKNFVTVNHKYPMLSLGNTYNEQDLRDFDERIRKAIGDNFEYVCELKFDGLS
ISLTYENGKLLRAVTRGDGTKGDDVTNNVKTIHTIPHQIKTDQAPDHFEIRGEIFMHKAA
FLKLNAAREELGEIPYANPRNFASGTIKMQDSKEVAKRPLDGFIYFLYTDKNEFKNHWES
LQAVKNWGFHVCEHNRLVKNIDDVLAFIHYWEEERFKLSYDIDGIVIKVNSYAQQQELGF
TAKSPRWAISYKYKAAEVETVLEKVTYQVGRTGAVTPVANLKPVLLAGTTVKRATLHNAN
EIERLDLHEGDTVFVEKGGEIIPKIIKVNLGKRTANTSKVLYPHNCPECGTELIRKESEA
VHYCPNDEGCPPQIVGKIQHFISRKAMNIDGLGDETIETFYRNNLVNHISDLYTLHQKAG
QLKQLDRFGERSIENMLAGIEKSKEMPFEKVLFGLGIRYVGETVAKKLAAGVKNIDNLSK
SSIDELTAIDEIGQRIAESIIEYFSKDEHLKQIDLLKSAGLRFEIEEKVIELASDKLIGK
TFVISGVFESYGRDELKDLIEANGGKILSGISGKLNYLVAGDNMGPSKLEKATKLNVPII
SDAELIEMIK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggcattgtttgcaataaaggaagaaatggatgcgctggttgcagaattaaaccagcat
aattacaattattacgttttggcaatgccaaccattggcgactatgagttcgacaaaaag
ttgaaacgcctcgccgatcttgaaaaagcacaccccgaacttgccgaccccaactcccct
acccaacgcgttgggggcgatattaccaaaaactttgtcacggtaaatcacaaatacccc
atgctttcgttgggcaacacttataacgagcaggatttacgcgattttgatgagcgcatc
cggaaggcaatcggcgacaactttgaatacgtttgcgagctgaagtttgatggcttgtcg
attagcttaacctacgaaaacggaaagctattacgtgcggtaacgcgtggcgatggcaca
aaaggtgatgatgtaaccaataacgttaaaaccattcacaccattccccaccaaataaaa
accgatcaggcacctgatcattttgagattcgtggcgagatttttatgcacaaggcggcc
tttttgaaattgaatgcagcgagagaggaactgggcgaaattccgtatgccaacccgcgc
aactttgcttcgggaacaattaagatgcaagacagcaaggaagtagccaaacgcccgtta
gatggctttatctattttctttataccgataaaaatgagttcaaaaatcactgggaaagc
ttgcaagcggtaaaaaactggggctttcacgtttgcgaacacaatagactggttaaaaac
attgacgatgtgctagcgtttatccactattgggaagaagaacgcttcaaattaagttac
gatattgatggcattgtaatcaaggtaaacagctatgcgcaacaacaagagctcggtttt
acagcaaaatcgccgcgttgggcaatttcttataagtataaagctgccgaggttgaaact
gttttagaaaaggtaacttatcaggttggccgtaccggagcggttacgcctgttgctaac
ttaaagccggttttactggccggaacaaccgttaagcgggcaaccttgcacaatgcaaac
gaaattgagcgactggatttacacgagggtgataccgtttttgtagagaagggcggcgaa
attattccaaaaatcatcaaggtcaatctcggcaaaagaactgctaacaccagcaaagtg
ctttacccgcacaattgcccggaatgcggaaccgagttgatcagaaaagagagcgaggca
gtacattactgccctaatgatgaaggctgcccgccccaaattgtcggtaagattcaacac
ttcatatcccgcaaggcgatgaatattgatggcctgggcgacgaaacgatcgaaacgttt
taccgcaataacctggtgaaccacatcagcgatctgtataccttgcatcaaaaggccggt
cagctcaaacaattagatcggtttggtgagcgatcgatcgaaaacatgctcgcgggtatt
gagaaatcgaaagaaatgccctttgaaaaggtgttgttcggtttgggcatccgttatgtg
ggcgaaacagtagcaaaaaaattagcggctggcgtaaagaacatcgacaacctatcaaag
tcgagcatcgatgaattaacagcaatcgacgagattggccagcgcattgccgaaagtata
attgaatatttctcaaaagatgagcacttaaagcagatagatttattaaaatcggcaggt
ttacgctttgaaattgaagaaaaggtaattgagctggctagtgataaacttattggaaaa
acattcgtaatttcgggcgtttttgaaagctatggtcgcgatgaactgaaagatctgatt
gaagcaaacggcggaaaaattcttagcggaatttctggcaaactgaactacctcgttgct
ggcgataacatgggtccatcaaagctcgaaaaagctacaaaactcaatgttccgatcatc
agcgatgcggagcttatagaaatgataaaataa
DBGET
integrated database retrieval system
