Phascolarctobacterium faecium: PFJ30894_00201
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Entry
PFJ30894_00201 CDS
T05784
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfac
Phascolarctobacterium faecium
Pathway
pfac03030
DNA replication
pfac03410
Base excision repair
pfac03420
Nucleotide excision repair
pfac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFJ30894_00201 (ligA)
03410 Base excision repair
PFJ30894_00201 (ligA)
03420 Nucleotide excision repair
PFJ30894_00201 (ligA)
03430 Mismatch repair
PFJ30894_00201 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfac03032
]
PFJ30894_00201 (ligA)
03400 DNA repair and recombination proteins [BR:
pfac03400
]
PFJ30894_00201 (ligA)
Enzymes [BR:
pfac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PFJ30894_00201 (ligA)
DNA replication proteins [BR:
pfac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PFJ30894_00201 (ligA)
DNA repair and recombination proteins [BR:
pfac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PFJ30894_00201 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PFJ30894_00201 (ligA)
MMR (mismatch excision repair)
DNA ligase
PFJ30894_00201 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PFJ30894_00201 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
zf-tcix
RNA_ligase
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
BBG62588
LinkDB
All DBs
Position
complement(210466..212526)
Genome browser
AA seq
686 aa
AA seq
DB search
MELERAQAKNEAEHLRAEIRHHEFLYYVLDAPEITDAEYDRMLVRLRELEAAWPDDVPAD
SPTRRVGGKVNPEFTEVRHLTPLLSLGNAFSDAELVAFDQRVRSGLPEGSAVEYVMEPKI
DGLACSLIYENGRLVRAATRGDGVTGENVTANVRTIRSIPLVLNMKNGAAPPELLDVRGE
IYMPRHAFMQLNEQRLEAGESEFANPRNAAAGSLRQLDPNVTAQRSLSFFAYAVGEGARD
KHADSLAMLADYGFKVSENYRIVKSIDAAIEYIRDFDSRRKSLAYDTDGAVLKVNAVYQQ
DILGATGKDPRWAIAFKFPPEQAETRLEDIVIQVGRTGVLTPTAVLTPVRLSGSTVSRAT
LHNEDFIKAKDIRIGDTVVINKAGEIIPEVLHVVLGKRPEDTKPYAMPQECPECGWAVER
KDGEAALRCTNPHCPALGREGLIHFASKGAMYIEGCGPAVINQLLEAELIRDVSDLYLLT
KEQLVVLDRMGEKSAENLVKAIAASKEQSFDRLLFGLGIRHVGAKVARLLAVHFGTVENL
LAADAEQIAAIDDIGPKIAESVVTYLASPSNRDLLTRLKELGLNMEMQVQAVSEEHPFYG
KTMVFTGTMPTLGRAEAQTMAQDVGAKVSGSVSKKTDYVVAGAEAGSKLTKAEQLGVTVI
DEAEFLRLLSGAAEVSGTATKEQKLF
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggaactggaacgcgcacaggctaaaaacgaggccgaacatttgcgggcagagatccgc
catcacgaatttttatattatgtgctggatgcacctgagatcaccgatgcagaatatgac
cggatgctggtgcgcctgcgtgagctggaagcggcctggcctgacgatgtgcctgccgat
tcgccgacgcgccgtgtaggcgggaaggtgaatcccgaatttactgaggtcagacatctg
acgccgcttttgagtctgggcaatgctttttcggatgcagagctggtagcttttgatcag
cgtgtgcgcagcggtctgccggaaggcagcgctgtagaatatgttatggagccgaaaatc
gacggactggcctgcagcctgatttatgaaaatggacgtttggtaagggcggcaacgcgc
ggtgacggtgtgaccggcgaaaatgtaacagccaatgtacgcacgatccggtcgatccct
ttggtgctgaatatgaaaaacggcgccgcgccgccggagcttttagatgtgcgcggtgaa
atctatatgccaaggcatgcttttatgcagctgaacgaacagcgcctggaggccggcgag
agcgaatttgccaatccgcgtaatgcggctgccggcagtctgcgtcagctggaccctaac
gtaacggcgcagcggtcgttaagcttttttgcttatgccgtaggcgaaggagccagggac
aagcatgccgattctttggcgatgctggctgattatggctttaaggtcagtgaaaattac
cgtatcgtaaaaagtatcgatgcggcaatagaatatatcagggactttgactcccggcgt
aaaagtctggcttatgatactgacggcgcagtacttaaagtcaacgctgtttatcagcag
gatattttaggtgcgacaggcaaggacccacgctgggcgatcgcttttaaatttccgcct
gagcaggctgaaaccaggctggaggatatcgtgatccaggttgggcgcacaggcgtgctg
acgccgacggcggtactgacgccggtaaggctgtcgggcagtacggtaagcagggccacg
ctgcacaatgaagattttattaaagcgaaggatatcaggatcggcgatacggtggtcatc
aataaagccggtgagatcatcccggaggttctgcatgtcgtgctgggcaaacggccggaa
gatacgaagccttatgcgatgccgcaggaatgtccggagtgcggctgggctgttgaacgt
aaagacggtgaggcagctttgcgctgcactaatccgcattgcccggctttgggacgcgaa
gggctgatccattttgcttctaaaggagcaatgtatatcgaaggctgtggaccggcggtg
atcaatcagctgctggaggcggaactgatccgcgacgtcagcgacctgtatctgctgact
aaagaacagctggtagtgctggatagaatgggtgaaaaatcggcggaaaatttagtgaaa
gctattgccgccagcaaggagcagagcttcgaccggctgcttttcggcctgggcatccgt
cacgtcggggccaaggtggctaggctgctggcagtgcattttggtacggtcgagaatttg
ctggctgccgatgcagagcagatcgccgctatcgacgatatcggaccgaagatagctgaa
agtgtcgttacttatttggcgtcgccgtcgaaccgcgacttgctcacccgtctgaaagag
ctgggtctgaatatggaaatgcaggttcaggctgtcagcgaagagcatcccttttatggc
aaaactatggtctttacaggtacgatgccgactttgggacgtgctgaagcacagactatg
gcgcaggacgtgggcgctaaggtcagcggcagcgtcagtaaaaaaacggactatgtcgtt
gccggtgccgaagcaggcagtaagctgacgaaggcggaacagctgggtgtgactgttatc
gacgaagccgaatttttgcgcttgctaagcggtgcagctgaagtatcggggacagcgaca
aaggaacagaagcttttttaa
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