Planococcus faecalis: AJGP001_04690
Help
Entry
AJGP001_04690 CDS
T04955
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfae
Planococcus faecalis
Pathway
pfae03030
DNA replication
pfae03410
Base excision repair
pfae03420
Nucleotide excision repair
pfae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AJGP001_04690 (ligA)
03410 Base excision repair
AJGP001_04690 (ligA)
03420 Nucleotide excision repair
AJGP001_04690 (ligA)
03430 Mismatch repair
AJGP001_04690 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfae03032
]
AJGP001_04690 (ligA)
03400 DNA repair and recombination proteins [BR:
pfae03400
]
AJGP001_04690 (ligA)
Enzymes [BR:
pfae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AJGP001_04690 (ligA)
DNA replication proteins [BR:
pfae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AJGP001_04690 (ligA)
DNA repair and recombination proteins [BR:
pfae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AJGP001_04690 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AJGP001_04690 (ligA)
MMR (mismatch excision repair)
DNA ligase
AJGP001_04690 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AJGP001_04690 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_pol_A_CTD
BRCT_2
RNA_ligase
5_3_exonuc
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AQU78631
LinkDB
All DBs
Position
958291..960297
Genome browser
AA seq
668 aa
AA seq
DB search
MDRLKAEQRVNELNEMLRNYGHAYYVLDKPAVPDAIYDQLLNELIDLETLYPDLVFPDSP
TQRVGGAPLSTVDKVTHERPMLSLSNVFDEKDLHEFDKRVRSGAGDKIEYVCELKIDGLA
VSLLYENGKFVKGATRGDGRIGEDITVNLRTIRTIPLKLKEAVSLEVRGEVFMPKKSFHA
LNEERGERGEELFANPRNAAAGSLRQLDPKIAASRNLDVFIYGIGGDGETYNLSNHDESL
DYLAGLGFKTNKERRVCTTVEEVLAYIEKWTDKRNDLPYEIDGIVIKVNQFLYQQELGFT
AKSPKWATAYKFPAEEVMTTVRDIELSVGRTGVVTPTAILDPVSVAGTTVQRASLHNEDL
IKEKDIRIGDKVIIRKAGDIIPEVVAVILDQRTEEELPFEMPTHCPACDSELVRIEGEVA
LRCVNPQCPAQITEGLIHFVSRNAMNIDGLGEKVIEQLYREGLVHDISDIYKLTKEQLLE
LDRMGDKSASNLVAAIEASRSNSMEKLLFGLGIRHVGERGARILSEHFGTLAQLIAATKE
ELVEIHEIGEKMADSIVMYFDSEEVRALVERLHEANVNLTYTGTRVRIEEGANAFAGKKI
VLTGKLEQMTRQEASAQIEALGGKLSGSVSKKTDLLIAGEEAGSKLDKARELKVEIWDEA
RLVEELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcttaaaagcagaacaacgtgtaaatgaattaaacgaaatgcttcggaactat
ggtcatgcttattatgtactcgataaaccggccgttccggatgcaatatatgatcaatta
ctgaatgaattaatcgacttagaaacgctttatcctgatctggttttcccagattcacca
actcaacgtgttggcggagcaccactttcaactgtcgataaagtcacgcatgaacgtcca
atgctcagtttatctaatgtttttgacgaaaaggatttacatgaatttgataaacgagta
cgcagtggtgcaggtgataagattgagtatgtttgcgagctgaaaattgatggtcttgcg
gtatcactgttgtatgaaaacggtaaattcgtcaaaggagcaacacgcggagacggtcgc
attggtgaagatatcacagttaatctgcgaaccatccgtactatcccactcaaattaaaa
gaagccgtctcgcttgaagtgcgcggcgaagtcttcatgcccaaaaaatccttccatgcc
ttgaacgaagagcgtggtgaacgaggcgaagagctattcgccaatccacgaaacgctgcg
gcaggatcgctacgtcaattggatcctaaaattgcagcgagccgaaatttggatgttttt
atttatggaattggtggcgacggggaaacatataatttatcaaaccacgatgaatccctt
gattatcttgcaggtctcggctttaaaacaaataaagaacgccgagtgtgtacgactgtt
gaagaagtattggcgtatattgaaaagtggactgacaaacgaaatgacttgccctatgaa
attgacggcatcgtcattaaagtcaatcaatttttataccagcaagaacttggctttaca
gcgaaaagtccaaaatgggcaacagcttataaatttccggcagaagaagtaatgacgact
gtacgcgatattgaattgagtgttgggcgaacgggagttgtgacaccaacggcgatatta
gatccagtatcggttgcaggaacgactgtgcaacgtgcttctttgcacaacgaagatttg
atcaaagaaaaagatattcgaattggcgataaagtgatcattcgaaaagcgggagacatt
attccagaagtcgtagctgtcattcttgatcaacgaactgaagaagaactgccttttgaa
atgccgactcattgtccggcatgtgatagcgagttagttcgcatcgaaggagaagttgcg
cttcgctgcgtcaatccgcaatgtccggcacaaatcacagaaggactcattcactttgtg
tcacgtaacgcgatgaatattgacgggcttggtgaaaaagtgattgagcaattgtaccgg
gaaggcttggttcacgacatttctgatatttacaagctaacaaaagaacaattgctagaa
ctggatcgcatgggtgacaagtctgcatccaacttagtagcagcgattgaggcttctaga
agcaattcgatggagaaattgttgtttggtctgggtatccgccatgttggcgaaagagga
gcgcgtattttatccgaacattttggaacgttagcacaattaatcgcagcaacaaaagaa
gaactagtcgaaatacatgaaattggcgaaaaaatggcggattctatcgtgatgtatttt
gatagtgaagaagttcgtgcattggtggaacgtttgcacgaagcgaacgtcaatctaact
tatacgggtacacgagtacgtatcgaagaaggtgcaaatgcatttgcaggaaagaaaatt
gttttgacaggtaagctggaacaaatgactcgtcaagaggctagcgctcaaattgaggcg
cttggaggcaagctgtcaggcagcgtgagcaagaaaacagatttgcttattgcaggtgaa
gaagcaggttcaaagctcgataaagcgcgcgagcttaaagtagagatttgggacgaagca
cgtctcgttgaggaattgaacaaataa
DBGET
integrated database retrieval system
