Parabacteroides faecis: NXY11_09130
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Entry
NXY11_09130 CDS
T08643
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfai
Parabacteroides faecis
Pathway
pfai03030
DNA replication
pfai03410
Base excision repair
pfai03420
Nucleotide excision repair
pfai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NXY11_09130 (ligA)
03410 Base excision repair
NXY11_09130 (ligA)
03420 Nucleotide excision repair
NXY11_09130 (ligA)
03430 Mismatch repair
NXY11_09130 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfai03032
]
NXY11_09130 (ligA)
03400 DNA repair and recombination proteins [BR:
pfai03400
]
NXY11_09130 (ligA)
Enzymes [BR:
pfai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NXY11_09130 (ligA)
DNA replication proteins [BR:
pfai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NXY11_09130 (ligA)
DNA repair and recombination proteins [BR:
pfai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NXY11_09130 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NXY11_09130 (ligA)
MMR (mismatch excision repair)
DNA ligase
NXY11_09130 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NXY11_09130 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
Auto_anti-p27
PTCB-BRCT
RNA_ligase
BRCT_2
HHH
EAD10
YhaO_M
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
UVQ48367
LinkDB
All DBs
Position
complement(2160337..2162337)
Genome browser
AA seq
666 aa
AA seq
DB search
MEVEAKIKALRDELEQHNYNYYVLSAPTISDREFDEKMKELQALEEAHPEFADPHSPTQR
VGSDLSKEFEQVVHQYPMLSLGNTYSEEEIRDFYERTERALNEPFEIVAELKYDGTSISL
IYENGRLVRAVTRGDGTRGDDVTANVKTIRSVPLKLRGENYPANFEIRGEILLPWAEFDR
LNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGENLPAEGHYENLQM
ARTWGFKIPDVIRKCNSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQKNLGFTAK
SPRWAIAYKFQAERAVTRLNSVSFQVGRTGAVTPVANLEPVLLAGTTVKRASLHNADIIE
GLDLHLGDNVYVEKGGEIIPKIVGVDVDSRSMLLGAKVTFIKTCPECGTPLYRPEGEAAH
YCPNESGCPPQIKGRIEHFVTRRAMNINMGPETVEDLYDAGLVKNVADLYTLQMTDLLRL
ERWAEKSARNLMTSLEESKQVPFERVLFGLGIRYVGETVAKRLASAFHSMQQLQEASLET
LTEVDEIGERIARSVVDYFADEDNRILVARLQVSGLQMAVAEEVLANRSDKLKGLTIVIS
GTFSQHSRDEYKAMIEQHGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINENEF
LNMLAE
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggaagtagaggcaaagattaaagcacttcgtgatgagctggagcaacataattacaat
tattatgtgctttccgcaccgactatatcagaccgtgagtttgatgagaagatgaaagag
ttacaggcattggaggaagctcatcctgaatttgccgatccgcattcacctacgcaacgg
gtgggaagcgacctgtcgaaagagtttgaacaggttgttcatcagtatccgatgctttct
ttggggaatacctattccgaagaagagatacgtgatttctatgagcggacggaacgtgct
ttgaacgagccttttgagattgttgccgaactgaaatatgacggaacttccatctcgttg
atctatgagaacggacgtctggtgcgtgccgttacccgtggtgacggaacccgtggagat
gatgtgacggcgaacgtaaagacaatccgttctgtccctttaaaattgcgcggagagaat
tatcctgctaattttgagattcgtggtgagatattacttccgtgggcggaattcgaccgt
ctgaacaaagaacgcgaagaacaggaagaaccgctttttgccaatccccgtaatgccgcg
tcaggaacattgaaacagcagaatccggctattgtggcttcacgtaagctggatgcttat
ttctattatttgctgggggaaaaccttcccgccgaaggtcattatgaaaacttacagatg
gcccgtacctggggattcaaaatacctgatgttatccgtaagtgcaatagcttgcaggat
atttttgactacattgcttattgggatgtggaacggaaaaacctgccggtagcaacagac
ggcatcgttctgaaagtaaattcgcttcgccagcagaagaatctgggattcacagctaaa
agtcctcgttgggcgatcgcttataaatttcaggcagaacgggcggtaacccgtctgaac
tctgtctctttccaggtaggacgaacgggagcggttactccggtagccaacctggagcct
gtattgcttgccggaacgaccgtgaaacgtgcctctttgcataatgcggatatcatagaa
ggtctggatttgcatctgggagataatgtatatgtggagaaaggaggagagatcatcccc
aagatcgtgggtgtcgatgtcgattcccgttcgatgttgttgggggcgaaggtcactttc
atcaagacttgtccggaatgcggtacacctttgtaccgtcccgaaggagaggcggctcac
tactgtccgaatgaatccggttgccctccccagataaaaggtcgtatcgaacatttcgtt
acccgccgggcaatgaatataaacatgggccccgagacagtggaggatctgtatgatgca
ggtttggtcaaaaacgtggcagacttgtatacattgcagatgacagacttgttgcgtttg
gaacgttgggcggagaaaagtgcccgtaatctgatgaccagcctggaggaatccaagcag
gttccgtttgaacgggtattgtttggattaggtatccgttatgtaggtgagactgtagcg
aaacgtttggcttctgcatttcattcgatgcagcaattacaggaagcatcgttggaaacc
ttgacggaagtggatgagatcggcgaacgtatcgcacgcagtgtagtggattattttgcc
gacgaggataatcgcatattggttgcccgtctgcaggtttccggattacagatggcggtg
gcggaagaagtactggcaaatcgttctgacaagctgaaaggtttgacgatcgtgatcagc
ggaactttctcacagcattcgcgtgatgaatataaagcgatgattgaacagcatggcggc
aagaacagcggttctgtttccggcaaaacggattatatccttgccggagaaaatatgggt
ccggcaaaactggaaaaagcagccaagctgggagtaaagattatcaatgagaatgaattc
ttaaatatgttggcagaatga
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integrated database retrieval system
