Paracoccus ferrooxidans: E3U26_21875
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Entry
E3U26_21875 CDS
T09619
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfeo
Paracoccus ferrooxidans
Pathway
pfeo03030
DNA replication
pfeo03410
Base excision repair
pfeo03420
Nucleotide excision repair
pfeo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E3U26_21875 (ligA)
03410 Base excision repair
E3U26_21875 (ligA)
03420 Nucleotide excision repair
E3U26_21875 (ligA)
03430 Mismatch repair
E3U26_21875 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfeo03032
]
E3U26_21875 (ligA)
03400 DNA repair and recombination proteins [BR:
pfeo03400
]
E3U26_21875 (ligA)
Enzymes [BR:
pfeo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E3U26_21875 (ligA)
DNA replication proteins [BR:
pfeo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E3U26_21875 (ligA)
DNA repair and recombination proteins [BR:
pfeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E3U26_21875 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E3U26_21875 (ligA)
MMR (mismatch excision repair)
DNA ligase
E3U26_21875 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E3U26_21875 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
PTCB-BRCT
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
WGR63319
LinkDB
All DBs
Position
pFER4:complement(1007500..1009797)
Genome browser
AA seq
765 aa
AA seq
DB search
MAGDDEDRAVPAGEPAAPAAALPPVSSLDAEAAEAEHARLSDEVARANLAYYQEDAPFIS
DAEYDACKRRLEEIEARFPHLAHPGSPTEQVGATPDTRFAKIPHRLPMLSLENGFTQGDV
EAFVQRVRSFLNLAPGAALEITAEPKIDGLSLSLRYEGGRLVQAATRGDGAVGENVTANA
RTIADIPGQLAGDDWPDVLEIRGEVYMSHVDFEKLNQSDSGRVFANPRNAAAGSLRQLDP
AVTASRPLRFFAYAWGEVSAPFARTQMEAVRRMQDFGFQTNPLTRICASVQDMLAAWAEI
EQMRATLGYDIDGVVYKVNELGYQARLGMRSTTPRWALAHKFPAERAWTRLEAIDIQVGR
TGALSPVARLHPVTVGGVVVSNATLHNEDYIAGRGADGSEIRGGKDIRIGDWVEVYRAGD
VIPKVADVDLAKRPPEAAPYAFPATCPECGSPAIREEGDSIRRCTGGLICPAQAVEKLRH
FVSRAAFDIEGLGAKLVEELFRDGWIAEPADIFTLEDRYGPGQPRQLKNREGWGEKSAAS
LFQAIQKRREIPLARLLFALGIRHVGEVAAQDLARHYGSWQALEAALDTARPAAIAHRAA
EEAVQAEREAAQAEGRRARPAEARAAALAQADLPADAANAWAGLIAADGIGPVLAMSLSD
AFANERERAAIDRLVAHLTVLPPEARATDSAITGKTLVFTGTLEKMTRAEAKARAEALGA
HVAGSVSAKTDLLIAGPGAGSKAKKAAELGIKVIDEDEWLAIAQG
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggccggagatgacgaggatcgggcggttccggcgggggagccggcagcgccggctgcg
gccctgccgcccgtctccagcctggacgccgaggccgccgaggccgagcacgcccggctg
agcgacgaggtggcgcgggcgaacctggcctattaccaggaagatgcgcccttcatcagc
gatgccgaatacgacgcctgcaagcgccggctggaagagatcgaggcgcgctttccccat
ctggcccatcccggcagcccgaccgagcaggtcggcgccacgcccgatacgcgctttgcc
aagatcccgcatcgcctgccgatgctgtcgctggaaaacggctttacccagggcgatgtc
gaagccttcgtgcagcgggtgcgctcattcctgaacctcgcccccggcgcggcgctggag
atcaccgccgagcccaagatcgacgggttgtcgctgtcgctgcgctacgaaggcgggcgg
ctggtccaggccgcgacccgcggcgacggggcggtgggcgagaacgtgaccgccaacgcc
cgcaccatcgccgacattcccggccagcttgccggcgacgactggcccgacgtgctggag
atccgcggcgaggtctacatgtcgcatgtcgatttcgaaaagctgaaccagtccgacagc
ggccgagtctttgccaacccgcgcaatgcggcggcgggctcgctgcgccagctcgaccct
gcggtgacggcatcgcggcccctgcgcttctttgcctatgcctggggcgaggtcagcgcg
ccctttgcccgcacgcagatggaggcggtgcggcggatgcaggatttcggcttccagacc
aatccgctgacccggatctgcgcctcggtccaggacatgctggccgcctgggccgagatc
gagcagatgcgcgcgaccttgggctatgacatcgacggcgtggtctacaaggtgaacgag
cttggctatcaggcgcggctgggcatgcgctcgaccacgccgcgatgggcgctcgcgcac
aagttcccggccgagcgcgcctggacccggctggaagccatcgacatccaagtcggccgc
accggcgcgctgagcccggtggcgcggctgcatccggtgacggtgggcggtgtcgtcgtc
tcgaacgccaccctgcataacgaggattacatcgccggccgcggcgccgacggcagcgag
atccgcggcggcaaggacatccgcatcggcgactgggtcgaggtctatcgcgccggcgac
gtgatccccaaggtcgcggacgtggacctggccaagcgcccgcccgaggccgcgccctat
gcctttccggccacctgcccggaatgcggctcgcccgcgatccgggaagagggcgattcg
atccgccgctgcaccggcgggctgatctgcccggcccaggcggtcgagaagctgcgccat
ttcgtctcgcgtgccgccttcgacatcgaggggctgggcgccaagctggtcgaggagctg
ttccgcgacggctggatcgccgagccggccgacatcttcaccctggaggatcgctatggc
cccggccagccccggcagctgaagaatcgcgagggctggggcgagaaaagcgccgcgagc
ctgttccaggccatccagaagcgccgcgagatcccgctggcgcggctcttgttcgcgctc
ggcatccgccatgtcggcgaggtcgcggcgcaggatctggcccgccattacggcagctgg
caggcgctggaggcggcgctcgacaccgcgcgcccggccgccatcgcccatcgcgccgcc
gaggaggcggtccaggccgaacgcgaggccgcgcaggccgagggccgtcgcgcccgccct
gcggaggcgcgcgccgccgccttggcgcaggccgacctgccggccgatgcggcgaatgcc
tgggccgggctgatcgccgccgacggcatcggcccggtgctggccatgtcgctttcggac
gcctttgccaatgagcgcgagcgggcggcgatcgaccggctggtcgcgcatctgaccgtg
ctgccgcccgaggcgcgcgccaccgacagcgccatcaccggcaagacgctggtctttacc
ggcacgctggaaaagatgacgcgggccgaggccaaggcgcgggccgaggcgcttggcgcc
catgtcgcgggctcggtctcggccaagaccgacctgctgatcgccgggccgggcgcgggg
tcgaaggcgaagaaggcggccgagcttggcatcaaggtcatcgacgaggacgaatggctg
gcgatcgcccaggggtga
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integrated database retrieval system
