KEGG   PATHWAY: pfg00920
Entry
pfg00920                    Pathway                                
Name
Sulfur metabolism - Pandoraea faecigallinarum
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
pfg00920  Sulfur metabolism
pfg00920

Module
pfg_M00595  Thiosulfate oxidation by SOX complex, thiosulfate => sulfate [PATH:pfg00920]
Other DBs
GO: 0006790
Organism
Pandoraea faecigallinarum [GN:pfg]
Gene
AB870_21135  sulfate transporter subunit [KO:K23163]
AB870_21140  sulfate ABC transporter permease subunit CysT [KO:K02046]
AB870_21145  sulfate ABC transporter permease subunit CysW [KO:K02047]
AB870_21150  sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
AB870_15160  taurine ABC transporter substrate-binding protein [KO:K15551]
AB870_22995  taurine ABC transporter substrate-binding protein [KO:K15551]
AB870_15150  taurine ABC transporter permease [KO:K15552]
AB870_23000  ABC transporter permease [KO:K15552]
AB870_15155  nitrate ABC transporter ATP-binding protein [KO:K10831] [EC:7.6.2.7]
AB870_12035  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
AB870_04695  sulfonate ABC transporter substrate-binding protein [KO:K15553]
AB870_22955  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
AB870_15015  hypothetical protein [KO:K15553]
AB870_19250  ABC transporter substrate-binding protein [KO:K15553]
AB870_10780  nitrate ABC transporter substrate-binding protein [KO:K15553]
AB870_20345  ABC transporter substrate-binding protein [KO:K15553]
AB870_04675  ABC transporter substrate-binding protein [KO:K15553]
AB870_06635  nitrate ABC transporter substrate-binding protein [KO:K15553]
AB870_04680  sulfonate ABC transporter permease [KO:K15554]
AB870_20120  ABC transporter permease [KO:K15554]
AB870_10770  ABC transporter permease [KO:K15554]
AB870_06630  ABC transporter permease [KO:K15554]
AB870_20355  ABC transporter permease [KO:K15554]
AB870_20125  sulfonate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
AB870_06625  ABC transporter [KO:K15555] [EC:7.6.2.14]
AB870_04685  ABC transporter [KO:K15555] [EC:7.6.2.14]
AB870_20350  mannosyltransferase [KO:K15555] [EC:7.6.2.14]
AB870_10775  mannosyltransferase [KO:K15555] [EC:7.6.2.14]
AB870_20115  alkanesulfonate monooxygenase, FMNH(2)-dependent [KO:K04091] [EC:1.14.14.5 1.14.14.34]
AB870_04665  alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
AB870_20110  FMN reductase (NADPH) [KO:K00299] [EC:1.5.1.38]
AB870_17220  sulfate adenylyltransferase [KO:K00956] [EC:2.7.7.4]
AB870_17215  sulfate adenylyltransferase small subunit [KO:K00957] [EC:2.7.7.4]
AB870_17210  phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
AB870_10640  oxidase [KO:K05301] [EC:1.8.2.1]
AB870_10495  sulfur oxidation c-type cytochrome SoxA [KO:K17222] [EC:2.8.5.2]
AB870_10490  sulfur oxidation c-type cytochrome SoxX [KO:K17223] [EC:2.8.5.2]
AB870_10505  thiosulfate oxidation carrier protein SoxY [KO:K17226]
AB870_10500  thiosulfate oxidation carrier complex protein SoxZ [KO:K17227]
AB870_10480  thiosulfohydrolase SoxB [KO:K17224] [EC:3.1.6.20]
AB870_10520  sulfite dehydrogenase [KO:K17225]
AB870_10515  cytochrome C [KO:K22622] [EC:1.8.2.6]
AB870_00660  hypothetical protein [KO:K00380] [EC:1.8.1.2]
AB870_01440  sulfite reductase [NADPH] flavoprotein alpha-component [KO:K00380] [EC:1.8.1.2]
AB870_01530  nitrite reductase [KO:K00381] [EC:1.8.1.2]
AB870_01445  sulfite reductase subunit beta [KO:K00381] [EC:1.8.1.2]
AB870_21810  pyridine nucleotide-disulfide oxidoreductase [KO:K17218] [EC:1.8.5.4]
AB870_10535  flavocytochrome C [KO:K17229] [EC:1.8.2.3]
AB870_26110  hypothetical protein [KO:K17230]
AB870_02930  3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
AB870_20150  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
AB870_22865  serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
AB870_12710  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
AB870_20080  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
AB870_00760  long-chain fatty acid--CoA ligase [KO:K20034] [EC:6.2.1.44]
AB870_17475  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
AB870_15395  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
AB870_00175  enoyl-CoA hydratase [KO:K20036] [EC:4.2.1.155]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
pfg00260  Glycine, serine and threonine metabolism
pfg00270  Cysteine and methionine metabolism
pfg00680  Methane metabolism
pfg00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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