Pandoraea faecigallinarum: AB870_21465
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Entry
AB870_21465 CDS
T03972
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfg
Pandoraea faecigallinarum
Pathway
pfg03030
DNA replication
pfg03410
Base excision repair
pfg03420
Nucleotide excision repair
pfg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB870_21465 (ligA)
03410 Base excision repair
AB870_21465 (ligA)
03420 Nucleotide excision repair
AB870_21465 (ligA)
03430 Mismatch repair
AB870_21465 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfg03032
]
AB870_21465 (ligA)
03400 DNA repair and recombination proteins [BR:
pfg03400
]
AB870_21465 (ligA)
Enzymes [BR:
pfg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB870_21465 (ligA)
DNA replication proteins [BR:
pfg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB870_21465 (ligA)
DNA repair and recombination proteins [BR:
pfg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB870_21465 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB870_21465 (ligA)
MMR (mismatch excision repair)
DNA ligase
AB870_21465 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB870_21465 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AKM32129
UniProt:
A0A0H3WVC1
LinkDB
All DBs
Position
2221410..2223536
Genome browser
AA seq
708 aa
AA seq
DB search
MSQTSVPGQGANAHTAADATAAAQRAAELRIELARHNRAYYEDDAPLIPDAEYDRLFGEL
AALESNFPELQRPDSPTQRVGGKPVEGFAPVVHRVPMLSLNNGFEDEDVEAFDRRVSDGL
RELAAPNASSGDLFGSPDAPVEYAAELKFDGLAIALRYEHGVLVQAATRGDGTTGEDVTA
NIRTIKKIPLKLETDHPPEVLEVRGEVLMFRADFDRLNRAQEAAGEKVFVNPRNAAAGSL
RQLDSKITAKRPLSFFAYGVGELVGVPMPETHSGLLDWYVTLGIPVNDRREVVKGAQGLL
KFYREAGEARASLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTTLLDI
EVQVGRTGAITPVARLAPVFVGGATVTNATLHNEDEIRRKDVMIGDTVVVRRAGDVIPEV
VGSVLDRRPADARAFVMPSACPVCGSAIEKLPDEAIARCTGGLICAAQRKQALLHFAQRR
ALDIEGLGDKLVEQLVDQQIIRTPADLFKLGVAKLAALDRMADKSASNLVAALEAARHTT
LARFIFALGIRHVGEATAKDLARHFGKLDNLIGVCRRDSDLAELLAVPDVGPIVAESINN
FFCEDHNVEVIEQLRAAGVTWPESDPEAVAPLPLAGKTFVLTGTLPTLSRDEAKAMLEAQ
GAKVAGSVSAKTDYVVAGAEAGSKLAKAEALGVPVLDEDAMRAMLAAL
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaaacttccgttccgggtcagggcgcgaatgcccatacggccgccgacgctacg
gcagcagcacaacgtgccgccgaactgcgcatcgaactggcgcgccacaaccgcgcgtat
tacgaagacgacgcgccgctcattcccgatgccgagtacgaccgcctgtttggcgaactc
gccgcgctggaaagcaactttcccgagttgcagcgtcccgactcgccgacgcagcgggtc
ggcggcaagcccgtggagggatttgcgccggtcgtgcaccgcgtgcccatgctctcgctg
aacaacggttttgaagacgaggatgtcgaagccttcgatcgtcgtgtgtcggatggattg
cgcgagctcgccgccccgaatgcgtcgtccggcgatttgttcggttcgcccgatgcgcca
gtcgaatatgctgcggagttgaagtttgacggattggcgatcgcgttgcgttacgaacac
ggcgtgctggtgcaggctgcgacgcgcggcgatggcacgacgggcgaggacgtcaccgcg
aatatccgcacgatcaagaagatcccgctgaagctcgaaacggaccatccgcccgaggtg
ctggaggtgcgcggcgaagtgctcatgttccgcgccgacttcgacaggttgaatcgggcg
caggaagctgccggcgagaaagtgttcgtcaacccgcgcaatgcggcggcaggcagcctg
cgtcaactcgactcgaaaatcacggccaagcgcccactttctttttttgcctacggcgta
ggcgaactggtcggggtgccgatgcccgagacgcattcgggtttgctcgattggtacgtc
acgttgggcattccggtgaacgaccggcgcgaagtcgtgaagggggcacaagggctgctg
aagttttatcgtgaagccggcgaggcgcgggcatcgctgccttacgacatcgatggcgtt
gtgtacaaggtcaatcgccgcgacgagcaggatcggctcggattcgtctcgcgtgcgccg
cgtttcgcgctcgcgcacaaattccctgcacaggaagcgttgaccacactgttggacatc
gaggttcaggtcggccgtaccggcgccattacgccggtggcccgtctcgcgccggtattt
gtggggggggcgacggtgacgaacgccacgctgcacaacgaggacgagattcgccgcaag
gacgtgatgatcggcgacacggtcgtcgttcgccgcgcgggcgatgtgattcccgaggtc
gtgggatcggtgttggatcgtcgcccggccgatgcccgggccttcgtcatgccgagcgcg
tgccccgtgtgcggatcggccatcgagaaattgccggacgaggcgattgcccgatgcaca
ggcggcctgatttgtgcggcacagcgcaaacaggcgctgctgcatttcgcgcaacgtcgt
gcgctcgatatcgaggggctgggtgacaaattggtcgaacaactcgtcgatcaacagatc
attcggaccccggccgacttgttcaagcttggcgtagcgaagctggcggcgcttgaccgg
atggccgacaagtccgcgtccaatctcgtggcggcgctcgaagcggcgcgccacaccacg
ctggcgcgttttatcttcgcattgggcattcgccatgtcggcgaggcgacggcaaaggat
ctggcgcgccatttcggcaagctcgacaacctgatcggcgtatgcaggcgcgattccgac
ctcgcggaactgcttgccgtgccggacgtcggacccattgtggcggagtcgatcaacaat
ttcttctgcgaagatcataatgtcgaagtgatcgagcaactgcgggcggccggtgtcaca
tggccggagtcggatcccgaggccgtggcgccgctgccgttggcaggcaaaacgttcgtg
ctgacgggcacgcttcccacgctttctcgcgacgaggcgaaagccatgctggaggcacag
ggcgcgaaggttgccgggtctgtttctgcgaaaaccgattacgttgtggcgggcgcggaa
gcgggcagcaagttggcgaaggccgaggcgctgggtgtgccggtgctcgacgaggacgct
atgcgcgcgatgctggccgcgctttga
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