Paracoccus fistulariae: JHX87_03300
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Entry
JHX87_03300 CDS
T08856
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfis
Paracoccus fistulariae
Pathway
pfis03030
DNA replication
pfis03410
Base excision repair
pfis03420
Nucleotide excision repair
pfis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JHX87_03300 (ligA)
03410 Base excision repair
JHX87_03300 (ligA)
03420 Nucleotide excision repair
JHX87_03300 (ligA)
03430 Mismatch repair
JHX87_03300 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfis03032
]
JHX87_03300 (ligA)
03400 DNA repair and recombination proteins [BR:
pfis03400
]
JHX87_03300 (ligA)
Enzymes [BR:
pfis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JHX87_03300 (ligA)
DNA replication proteins [BR:
pfis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JHX87_03300 (ligA)
DNA repair and recombination proteins [BR:
pfis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JHX87_03300 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JHX87_03300 (ligA)
MMR (mismatch excision repair)
DNA ligase
JHX87_03300 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JHX87_03300 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HNH_repeat
Motif
Other DBs
NCBI-ProteinID:
WCR07869
UniProt:
A0ABY7SLU9
LinkDB
All DBs
Position
655937..658147
Genome browser
AA seq
736 aa
AA seq
DB search
MARSDDESGAWQETATGDGAGTDALTERQAADEIADLSLRLSQANEAYHTNDAPDISDAD
YDAMKSRLQQLEQAFPQLASPDSPTRKVGGALAEGFGKIEHAQRMMSLANAFSEEDVTDF
TARIRSFLGLAAEAPLNFTAEPKIDGLSLSLRYESGKLMQAATRGDGSVGENVTANARTI
DDIPQQLTGDVPEILEVRGEVYMTHQDFEALNASDSGRVFANPRNAAAGSLRQLDPRITA
ARPLRFFAYSWGELSAPLAATQMQAVERLAELGFQTNPLTTLCDDAAQMVEAWRQIEQQR
ATLGYDIDGVVYKVNDLSYQARLGFRATTPRWALAHKFPAETAWTRLQRIEIQVGRTGAL
SPVARLEPVTVGGVVVSNATLHNEDYIQGRDSHGQQIREGRDIREGDWVQIYRAGDVIPK
IADVDLSRRPETSAPYDFPTTCPECGSDAIREPGDSVRRCTGGMICPAQAVEKLKHFVGR
AAFDIDGLGARQIEMFFADKTLPIREPADIFTLQQRDAANLTKLKNRDGFGERSAQKLFA
AIDEARQVELKRLIFALGIRHVGEVASATLARHFGSWQALVDAIDAAAREPAFTAEDDKA
RRAVLAESPNWSELTGIDGVGAVLVQSLITTFAQPAEREGIDRLVQQLDIQSDDSPAQSD
SEISGKTLVFTGTLEKMSRAEAKARAETMGAKVAGSVSAKTDLLIAGPGAGSKARKAAEL
GIAVIDEDEWLRIAGQ
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcagtgacgacgaatccggggcatggcaggaaacagcgaccggtgatggtgcc
gggaccgatgcgctgaccgaacggcaggccgccgatgaaatcgcggatctgtcgctgcgg
ctgtctcaggccaatgaggcttatcacaccaatgacgcgcctgacatttcggatgccgat
tacgatgcgatgaaatcgcgcctgcagcagcttgagcaggcgttcccgcaactcgccagc
ccggacagcccgactcgcaaagtcggcggcgcgctggccgaaggttttggtaagatcgaa
catgcgcagcggatgatgtcgctggccaatgccttttcggaagaggatgtgaccgatttc
accgcccgcatccgaagtttccttggcttggccgccgaggcaccgctgaatttcaccgcc
gagccgaagatcgacgggctgtccctgtcgctgcgctacgaatccggcaagctgatgcag
gcggcgacacgcggcgatggcagcgtgggcgaaaacgtgaccgccaatgcccgcaccata
gacgatatcccccagcaactgaccggcgacgtgcccgagattctggaggttcggggtgag
gtctacatgacccatcaggatttcgaagcgctgaacgcctccgacagtggccgggtcttc
gccaatccgcgcaatgccgcggcggggtccttgcgccagttggacccacggatcaccgcc
gcacgcccgctgcgcttttttgcctatagctggggcgaattatccgcgcctctggccgcg
acgcagatgcaggcggtcgagcggctggccgaacttggctttcagaccaacccgctgacc
acgctttgcgatgacgcggcgcagatggtcgaggcctggcgccagatcgaacagcagcgc
gcgacgctgggctatgatatcgacggggtcgtctacaaggtgaacgatctgtcctatcag
gcaaggctgggctttcgcgcgaccaccccgcgttgggcgctggcgcataaattcccggcg
gaaaccgcatggacccggttgcagcggatcgagatacaggtcggccgcaccggagcgctg
tcccccgtggcgcggctggagccggtgacggtcggcggcgtcgtcgtctcgaacgcgacc
ctgcataacgaggattacattcagggccgcgacagccatggtcagcagatccgcgaaggc
cgcgacatccgcgagggggattgggtgcagatctatcgcgcgggcgacgtgatcccgaag
atcgccgatgtcgatctgtcccgccgacccgaaaccagcgcgccctatgattttccaacg
acctgtcctgaatgcggctcggatgcgatccgcgagccgggcgattcggtgcgccgctgt
acaggcgggatgatctgtcccgcgcaggccgttgaaaagctgaagcatttcgtcggacgc
gcagcctttgacatcgacggtctgggcgcccggcagatcgagatgttctttgccgacaag
accctgccgatccgcgagcccgccgatatcttcaccctgcaacagcgcgacgccgccaac
ctgaccaagctgaagaaccgcgatggtttcggcgaacgctcggcccagaagctgttcgcg
gcgattgatgaggcgcggcaggtcgaactgaaacggctgatcttcgcgcttggcatccgc
catgtgggcgaggtcgcctcggccacgctggcacggcatttcggcagttggcaggcgctg
gtcgatgccatcgatgcagcggcccgcgaacctgccttcacggcagaggatgacaaggcc
cgccgtgctgttctggccgaaagcccgaactggtcggaactgaccgggattgacggggtc
ggcgcggttctggtgcaatcgctgatcaccaccttcgctcagccggccgagcgcgagggc
atcgaccggctggtgcagcagcttgatattcagagcgatgacagcccggcgcagtccgac
agcgaaatcagcggcaagacgctggtctttaccggcacgctggagaagatgtcccgcgcc
gaggccaaggcccgggccgagacgatgggcgccaaggttgcgggatctgtcagcgccaag
accgatctgctgatcgccggaccaggggcgggctccaaggccaggaaggcggcggaactg
ggcattgccgtcattgacgaggatgaatggctgcggatcgcgggacaatga
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