Pseudomonas fitomaticsae: KJY40_28290 Help Entry KJY40_28290       CDS       T08740                                  Symbol ligB Name (GenBank) NAD-dependent DNA ligase LigB   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism pfit  Pseudomonas fitomaticsae Pathway pfit03030   DNA replication pfit03410   Base excision repair pfit03420   Nucleotide excision repair pfit03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pfit00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     KJY40_28290 (ligB)    03410 Base excision repair     KJY40_28290 (ligB)    03420 Nucleotide excision repair     KJY40_28290 (ligB)    03430 Mismatch repair     KJY40_28290 (ligB)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pfit03032]     KJY40_28290 (ligB)    03400 DNA repair and recombination proteins [BR:pfit03400]     KJY40_28290 (ligB) Enzymes [BR:pfit01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      KJY40_28290 (ligB) DNA replication proteins [BR:pfit03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      KJY40_28290 (ligB) DNA repair and recombination proteins [BR:pfit03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      KJY40_28290 (ligB)    NER (nucleotide excision repair)     GGR (global genome repair) factors      KJY40_28290 (ligB)    MMR (mismatch excision repair)     DNA ligase      KJY40_28290 (ligB)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       KJY40_28290 (ligB) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden OB_DNA_ligase RNA_ligase DUF3701 TilS Motif Other DBs NCBI-ProteinID:  UFP99862 UniProt:  A0ABY3Q103 LinkDB All DBs Position 6242106..6243782 Genome browser AA seq 558 aa AA seqDB search MLATLRMFLFFLPAFHFNVFAADCPDWAADRASSEVAALQQQIDRWDDAYHREGRSVIAD ELYDQSRLRLNQWRRCFKLPSPPGPLRTASGPVAHPVAHTGLDKLHDAADIATWLRDRKD VWVQPKVDGVAVTLIYRDGRLHQAISRGDGAHGQDWTASAKKIGAIPQQLTQPQDLLVQG ELYWRLNGHTQARAGSANARATVAGLLVRKDLDAEHAAGIGLFVWDWPQGPNELPERIAA LTQFGFPTTEPYTQAVASLIDAQRWRDHWYRSPLPFATDGVVLRQSLRPPAERWQARPPY WAVAWKYPFAQALADVRKVHFKIGRTGRITPVLELSPVMLDDRQIKRVSVSSLRRWQELD IRPGDQVAISLAGLTIPRLDDVLLRSTERADLNVPLASDFHALSCWQPTPGCESQFLARL TWLSGKQGLALPHVGRGTWEKLLKTGRLNGLLDWLTLDEPELANIAGLGGRSSARLLHSF HSARQRPFLQWLKALGLPPTGQATLADSWQALAQRNTEQWQAEAGIGPGRAAQLSAFFRD PQVLALSETLQAAGVDGF NT seq 1677 nt NT seq  +upstreamnt  +downstreamnt atgcttgccacactgcgcatgtttttgtttttcctgccggctttccacttcaacgtcttt gctgccgactgcccagactgggccgccgatcgagcatcgagcgaagtcgccgccctgcaa caacagatcgatcgctgggacgacgcctatcatcgcgaaggccgctcggtgatcgccgat gagctctacgatcagtcacgcctgcgcctgaaccaatggcgccggtgcttcaaacttccc tcaccacccgggccgttgcgtaccgcatcaggcccggttgcgcaccctgtcgctcacacc ggcctcgacaaacttcatgacgcggcggacatcgcgacctggctgcgcgaccgaaaggac gtctgggtacaacccaaggtcgatggcgtggcggtgaccctgatctatcgcgacggtcga ctgcatcaggcgatcagtcgcggggatggcgctcacgggcaggactggacggcttcggca aaaaagatcggagccattccgcaacagctgacgcaaccgcaggatctgctggtgcaaggc gaactctactggcgtttgaacgggcatacgcaggcacgtgccggcagcgccaacgcccgc gccaccgtggccggactgctggtgcgcaaggatctcgacgcggaacacgccgctggcatc gggctgtttgtctgggactggccgcaagggccaaacgaattaccggagcggatcgccgcc ctgacgcaattcggctttcccactacggagccctacacccaggccgtcgccagcctgatc gatgcgcaacgctggcgcgatcactggtatcgctcgccattgcccttcgccacggacggc gtggttctgcgccaaagcctgcgaccgcccgccgaacgctggcaggctcgtccgccctac tgggccgtcgcctggaaataccctttcgcccaggcgctggccgatgtgcgcaaggtgcac ttcaagatcggccgcaccgggcgcattacgccggtgcttgaactgtctccggtgatgctc gatgaccggcagatcaaacgggtcagcgtcagttcgctccggcgctggcaggaactggac attcgccccggcgatcaggtggcaatcagcctggccgggctgacgatcccgcgtctcgac gacgtgctactgcgcagcactgaacgcgcggatctgaacgttccgctcgccagcgacttt cacgccctgagctgctggcaaccgactccgggctgcgaaagccagttcctcgcgcgcctg acctggctcagcggcaagcagggactggccctgccccatgtcggtcgcggcacctgggag aaacttctgaaaacaggccgcctgaacggcctgctggattggttgaccctcgacgagccg gagcttgctaacattgctggtctcggcgggcgcagcagtgcccgcctgctgcacagtttt cacagcgcccgccaacggccgttcctgcagtggctcaaagccctggggctgccgccgacc ggtcaggcaacactcgccgattcatggcaggcgctggcacaacgcaataccgaacaatgg caggcagaagccggaatcggcccgggccgcgcggcgcagttaagcgccttttttcgcgac ccgcaggtactggccctgagtgaaaccctgcaagccgccggcgtcgacggcttctga

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