Pseudocercospora fijiensis: MYCFIDRAFT_142180
Help
Entry
MYCFIDRAFT_142180 CDS
T03109
Name
(RefSeq) hypothetical protein
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pfj
Pseudocercospora fijiensis
Pathway
pfj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MYCFIDRAFT_142180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pfj03041
]
MYCFIDRAFT_142180
Spliceosome [BR:
pfj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
MYCFIDRAFT_142180
Complex C
U5 SnRNP specific factors
MYCFIDRAFT_142180
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_IV
EFG_C
GTP_EFTU_D2
EFG_III
MMR_HSR1
EFL1
SRPRB
Motif
Other DBs
NCBI-GeneID:
19331209
NCBI-ProteinID:
XP_007930430
JGI:
142180
UniProt:
M3A5C6
LinkDB
All DBs
Position
Unknown
AA seq
985 aa
AA seq
DB search
MDDLYDEFGNYIGEPEESEEEQDAGAYDGAQYLDEDGEEAAQTGAEVMDIDDEGPSNAVV
LHEDKQYYPSASQVYGPDVETLIQEEDTQTLQQPIVAPIERKKFTVEEEDLPTVYFDRGF
LTDLMSFPEQIRNIALCGHLHHGKTSIMDMLVSQTHDVSHFMEGKTGKARDETMRYTDTH
LLERERGLSVKASPMSLLLQGTKGKSHLLNIIDTPGHVNFADEVAASLRLVDGVVLVVDV
VEGVQTQTELAIKHAVLAGIPLTLLINKVDRLMLELKLPPTDAYFKLKHVVEEVNTHIEN
TIPGRGEKFRVSPEKGNVAFACSSMEWCFTLPSFATMYAESYPSAEFDIKEFSKRLWGDI
YYNPRSRKFTRKPVEDRGKRSFVHFVLEPIYKLYSHTLSESPEDLKKTLASLGISLKPSQ
LKANAKNLLKMVCEQFFGPPAGLVDMVVEHVPSPVASSRQKLEKYYTGPLDSKTATAMLE
CDSDGPLVVHVTKLFNTQDAQGFHSFGRVMSGTARPGEQVRVLGENYSIDDEEDMVTATI
EQVSIAESRYNVPVSGIPAGNFVLLGGVDNSIMKSATIVAPKLPDDEDAYIFKPVVHFFD
SVFKVAVEPINPSELPKMLDGLRKINKSYPLITTKVEESGEHVVLGTGELYMDCVLHDLR
RMYAQMEIKVSDPVTRFCETCVDQSAMKCYALTPNKKNKLTFVAEPLDDGIAQDIETGKV
SIKDPVRKVGKFFEENYGYDILASRNIWAFGPDDMGPNILQNDTLPSDVDQKLLRSVKDT
IRQGFSWGTREGPLCEEPIRNVKFKITDVELASEAIFRGGGQIIPTARRACYSSFLMAGP
RLMEPLYSCTMLGPANAVSSLYTVLARRRGHVLSDAPVPGTPLYSVKGLLPVIDSFGFET
DLRIHTQGQATVSLVFDRWSIVPGDPLDKTIKLRPLEPASAQATARDFVLKTRRRKGLSE
DVTVSKYVEPEIMRQLRETGMLDGA
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggacgacctctacgatgagttcggaaactacatcggcgagccggaagagagtgaagag
gagcaggacgcaggcgcatacgatggcgcgcaatatctggacgaagatggagaagaggcg
gcgcagacaggtgctgaagtgatggacatagacgacgagggcccttcgaatgccgtagta
ctacacgaagacaagcaatactatccttcagcatcacaagtctatggacccgatgtcgaa
acgctcatccaagaagaggatacgcagacactgcagcagccgattgtggcgccgatcgag
cgcaagaagttcacagtggaagaggaggatctgcctacagtgtactttgaccgtggcttc
ctcacagatctgatgagctttcccgaacaaatacggaacattgcgctatgcgggcattta
caccacggcaagacgagtatcatggatatgcttgtgtcgcaaacacacgatgtgtcccac
ttcatggaaggcaagaccggcaaagcgcgcgacgagactatgcggtatacagacacacat
cttctggagcgagaacgagggctgtcagtgaaagccagcccaatgagtttgcttctgcag
ggtacgaagggaaaaagccacctactgaatatcatcgacaccccgggacatgtgaacttt
gcagacgaggtggcagcatcattacgcttagtcgacggtgttgtgctggtggtcgatgtc
gtggagggggtgcagacacagacagagcttgctatcaagcacgctgtgcttgcaggcatt
ccgctcacgctgctcatcaacaaggtcgatcgactaatgctcgaattgaagttgcctccg
accgacgcttacttcaagctaaagcatgtcgtggaggaggtcaatacgcacatcgagaat
acaattcctggtcgtggcgagaagttccgcgttagcccggagaagggtaacgtggctttc
gcatgcagcagcatggagtggtgcttcacactccccagtttcgcaaccatgtacgcggaa
agctatccaagcgcggaatttgacatcaaggagttcagcaagcgactgtggggcgacatt
tactacaacccaagatctcgaaaattcacgcgaaagccagtggaagatcgagggaagagg
agtttcgtgcatttcgtcttggagccaatctacaagctgtactctcacaccctatcagaa
tcgccagaagatctcaagaagactctggcgagccttggaatcagtctgaagccaagccag
ctgaaagctaatgctaagaatctgctgaagatggtatgtgagcaattttttggaccacca
gctggattggtggatatggttgtggagcacgtaccttcgcctgttgctagcagtcgacag
aagctcgagaagtattacacaggtccactagactcgaagaccgcgacggccatgttggaa
tgcgactctgatggaccactggttgtgcacgtcacaaagctgttcaacacccaagatgcc
caaggcttccacagctttggccgggtaatgagtggcaccgcaagacccggagagcaggtc
cgagtacttggagagaactacagcatcgatgacgaggaagacatggttactgcgacgata
gagcaggtctcaattgccgaaagcaggtacaatgtgccggtttctggcattccagcgggt
aactttgtgcttcttggtggcgtcgacaactcgatcatgaagagcgcaaccattgtcgcg
ccgaagttgccggacgatgaggacgcttacatcttcaaaccggttgtccacttcttcgac
agtgtattcaaggtcgcggtggagcccatcaacccttcagaattgcccaaaatgcttgac
ggcttacgcaagatcaacaagtcctacccactcattacgaccaaagtcgaggaatcgggc
gagcatgtggtccttgggactggcgagctttacatggactgcgttcttcacgaccttcga
cgcatgtacgcacagatggagatcaaggtctcagatccagtcacacgattctgcgagacg
tgtgtcgaccagagcgcgatgaagtgctatgccctgacgccaaacaaaaagaacaagctc
acttttgtggccgagccactcgacgacggcattgcacaagacatagagaccggcaaggtc
agcatcaaggatccggtgcgaaaggtcggaaagttctttgaggagaactacggctacgat
attctcgcttcccgcaatatctgggcatttggtccggacgacatgggaccaaatatcctt
cagaacgataccctgccatctgacgttgaccagaagctgctgcgttcagtcaaggacacc
atccgacagggtttctcgtggggtacaagagaaggccctctatgtgaggagcctatcagg
aacgtaaagttcaagatcacggatgtcgagctagcatcagaagcaatcttccgtggcggt
ggtcaaatcatccctacggcgcgacgagcatgctacagctccttcctcatggctggacca
agactgatggagcctttgtactcgtgcacgatgcttggcccggccaacgcagtctcctca
ctgtatacggtgctcgcgagaaggagaggccacgtgctaagcgatgcacctgtgccagga
acaccactctacagcgtgaagggcttgctaccggtcatcgattcatttggttttgagaca
gatctgcgcatccacacgcaagggcaggctactgtctctctggtattcgatcggtggagt
attgtcccaggtgatccgctggacaagaccatcaagctcagaccgctcgagccggcttcc
gcgcaagccacggcgcgagattttgtgctcaaaacaagaaggagaaagggtctcagcgag
gatgtgactgtgagcaagtatgtagagcctgagatcatgagacagctcagggagactgga
atgcttgatggcgcatga
DBGET
integrated database retrieval system
