Pseudomonas frederiksbergensis: PFAS1_16610
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Entry
PFAS1_16610 CDS
T04786
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk00300
Lysine biosynthesis
pfk00550
Peptidoglycan biosynthesis
pfk01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PFAS1_16610
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PFAS1_16610
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pfk01011
]
PFAS1_16610
Enzymes [BR:
pfk01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
PFAS1_16610
Peptidoglycan biosynthesis and degradation proteins [BR:
pfk01011
]
Precursor biosynthesis
Amino acid ligase
PFAS1_16610
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
PipB2_N
Motif
Other DBs
NCBI-ProteinID:
APV40888
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Position
3578242..3579705
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AA seq
487 aa
AA seq
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MSLSLNKIFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGGKFDGRAHIADALQRGAAAVA
YEVEGATVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRHLNLIGVTGTNGKTSVTQLVA
QALDLLGQHCGIVGTLGTGFYGALESGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHG
LDQGRVTALAFDVAVMTNLSRDHLDYHGTMQAYGEAKAKLFAWNDLKCRVVNLDDDFGRR
LAADDGESRLITYSLEDSRAYLYCREAQFDDEGVRATLVTPQGEHHLRSTLLGRFNLSNV
LAAVGALLGLDYALDEILKVLPKLEGPAGRMQRLGGGTQPLVVVDYAHTPDALEKVLMAL
RPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVLVTDDNPRTEDPAVIFDDIRAGF
TAVDKVTFVAGRGQAIAQLIASASADDVIVLAGKGHEDYQEINGQRHAFSDLVEADHALS
AWEVAHA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgagcctgaacaagattttcgcccacgccggccgcgatctgttgatccgcgaa
ctgaccctggacagccgcaacgtgcgggcaggcgatctgtttctcgccgtccctggcggc
aagttcgacggacgcgcacacattgccgacgccctgcaacgcggcgctgccgctgtggcg
tatgaagtcgaaggcgcgaccgtattgccgattaccgatgtgccgctgattccggtcaaa
ggcctggcggcgcagctgtcggacattgccgggcgtttttacggtgaccctagtcgccac
ttgaacctaatcggcgtgaccggcaccaacggcaaaaccagcgtgacgcagttggttgca
caagccctggatttgctcggccagcattgcggcatcgtcggcacgttgggcaccggtttt
tacggcgcgctcgaaagcggcttgcacaccacaccgaacccgatcgccgtgcaggcaacc
ctcgccgacctgaaaaaggccggtgccaaagccgtcgccatggaggtttcttcccatggt
ctggatcaggggcgcgtgaccgccttggccttcgatgtggcggtgatgaccaacctgtcc
cgcgatcacctggattaccacggcacgatgcaagcctacggcgaagccaaggccaagttg
tttgcctggaatgatttgaagtgccgggtggtcaacctcgacgacgatttcggccgccga
ctggccgctgatgatggtgagtcgcgcttgatcacctatagcctggaagactccagggcc
tacctttattgccgtgaagcgcagttcgatgacgagggcgtgcgcgccacgctggtcacg
ccgcagggtgagcatcatctgcgcagcaccttgctcggtcgcttcaacctgagcaacgtg
ctggccgcggtcggcgccttgctgggtcttgactacgcgctggacgaaattctcaaggtc
ctgccaaaactcgaaggcccggccggacgcatgcagcgcctcggcggcggtactcagccg
ctggtggtggtcgattacgctcatacaccggatgcgctggaaaaagtcttgatggccctg
cgccctcacgccaaaggtcgtttgctgtgcctgttcggttgcggtggtgatcgcgatcgc
ggcaagcgtccgctgatggctgaagtggtcgagcgtctggctgacggcgtgctggtgacc
gatgacaacccgcgcaccgaagacccggcagtgatcttcgacgacatccgcgccggtttt
accgctgtggataaagtcaccttcgtcgcaggccgtggccaggcgattgcccaactgatc
gccagcgcttcggcggatgatgtgattgtcctggccggtaaaggtcacgaggactatcag
gaaatcaacggccagcgtcatgctttctccgatctggtcgaggccgatcacgccttgagc
gcgtgggaggtggcccatgcttaa
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